Evidence map›Paper›PMID 23194976›Full record

ArticleAdvances in biological regulation2013

Dynamic steps in receptor tyrosine kinase mediated activation of class IA phosphoinositide 3-kinases (PI3K) captured by H/D exchange (HDX-MS).

John E Burke, Roger L Williams

Open access · hybridAbstract read
In one paragraph

Article in Advances in biological regulation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Cancer-AssociatedInternational journal of medical sciences · 2025
    Review
  8. Making PI3K superfamily enzymes run faster.Advances in biological regulation · 2025
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Cryo-EM structures of cancer-specific helical and kinase domain mutations of PI3Kα.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Nanobodies and chemical cross-links advance the structural and functional analysis of PI3Kα.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  15. Article
  16. The orchestrated signaling by PI3Kα and PTEN at the membrane interface.Computational and structural biotechnology journal · 2022
    Review
  17. Article
  18. Cryo-EM structures of PI3Kα reveal conformational changes during inhibition and activation.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

John E BurkeMedical Research Council, Laboratory of Molecular Biology, Cambridge CB2 0QH, UK. jburke@mrc-lmb.cam.ac.uk
Roger L Williams
Medical Research Council · GBMRC Laboratory of Molecular Biology · GB

Funding

British Heart Foundation PG/11/109/29247British Heart Foundation PG11/109/29247Medical Research Council MC_U105184308Medical Research Council U105184308
6 · The paper itself

Abstract

The catalytic subunits of all class IA phosphoinositide 3-kinases (PI3Ks) associate with identical p85-related subunits and phosphorylate PIP2 yielding PIP3, but they can vary greatly in the signaling pathways in which they participate. The binding of the p85 subunit to the p110 catalytic subunits is constitutive, and this inhibits activity, but some of the inhibitory contacts are reversible and subject to regulation. Interaction with phosphotyrosine-containing peptides (RTK-pY) releases a subset of these inhibitory contacts. Hydrogen/deuterium exchange mass spectrometry (HDX-MS) provides a map of the dynamic interactions unique to each of the isotypes. RTK-pY binding exposes the p110 helical domains for all class IA enzymes (due to release of the nSH2 contact) and exposes the C-lobe of the kinase domains of p110β and p110δ (resulting from release of the cSH2 contact). Consistent with this, our in vitro assays show that all class IA isoforms are inhibited by the nSH2, but only p110β and p110δ are inhibited by the cSH2. While a C2/iSH2 inhibitory contact exists in all isoforms, HDX indicates that p110β releases this contact most readily. The unique dynamic relationships of the different p110 isozymes to the p85 subunit may facilitate new strategies for specific inhibitors of the PI3Ks.

Indexed as

AnimalsDeuteriumDeuterium Exchange MeasurementEnzyme ActivationHydrogenIsoenzymesMass SpectrometryMiceModels, MolecularPhosphatidylinositol 3-KinasesPhosphorylationPhosphotyrosineProtein Structure, SecondaryProtein SubunitsRecombinant ProteinsSignal TransductionDeuteriumHydrogenIsoenzymesPhosphatidylinositol 3-KinasesPhosphotyrosineProtein SubunitsRecombinant Proteins

Identifiers

PMID23194976
PMCPMC3613897
OpenAlexW2095812294

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.