Evidence map›Paper›PMID 23192019›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2012

Structure of ribose 5-phosphate isomerase from the probiotic bacterium Lactobacillus salivarius UCC118.

Carina M C Lobley, Pierre Aller, Alice Douangamath, Yamini Reddivari, Mario Bumann, Louise E Bird, Joanne E Nettleship, Jose Brandao-Neto, Raymond J Owens, Paul W O'Toole and 1 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Approaches to automated protein crystal harvesting.Acta crystallographica. Section F, Structural biology communications · 2014
    Article
  3. Crystallization and preliminary X-ray diffraction analysis of selenophosphate synthetases from Trypanosoma brucei and Leishmania major.Acta crystallographica. Section F, Structural biology and crystallization communications · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Carina M C LobleyDiamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, England.
Pierre Aller
Alice Douangamath
Yamini Reddivari
Mario Bumann
Louise E Bird
Joanne E Nettleship
Jose Brandao-Neto
Raymond J Owens
Paul W O'Toole
Martin A Walsh

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The structure of ribose 5-phosphate isomerase from the probiotic bacterium Lactobacillus salivarius UCC188 has been determined at 1.72 Å resolution. The structure was solved by molecular replacement, which identified the functional homodimer in the asymmetric unit. Despite only showing 57% sequence identity to its closest homologue, the structure adopted the typical α and β D-ribose 5-phosphate isomerase fold. Comparison to other related structures revealed high homology in the active site, allowing a model of the substrate-bound protein to be proposed. The determination of the structure was expedited by the use of in situ crystallization-plate screening on beamline I04-1 at Diamond Light Source to identify well diffracting protein crystals prior to routine cryocrystallography.

Indexed as

Aldose-Ketose IsomerasesAmino Acid SequenceBinding SitesCrystallography, X-RayDimerizationLactobacillusMolecular Sequence DataProtein ConformationProtein FoldingSequence AlignmentAldose-Ketose Isomerasesribosephosphate isomerase

Identifiers

PMID23192019
PMCPMC3509960

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.