Evidence map›Paper›PMID 23190684›Full record

ArticleBMC genomics2012

Structure of the type IV secretion system in different strains of Anaplasma phagocytophilum.

Basima Al-Khedery, Anna M Lundgren, Snorre Stuen, Erik G Granquist, Ulrike G Munderloh, Curtis M Nelson, A Rick Alleman, Suman M Mahan, Anthony F Barbet

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 36 citations in OpenAlex.

  1. Trial
  2. The type IV secretion system ofMicrobial genomics · 2025
    Article
  3. Article
  4. Genomic characterization of an emergingEmerging microbes & infections · 2024
    Article
  5. Review
  6. Review
  7. Article
  8. Comparative Whole Genome Analysis of anPathogens (Basel, Switzerland) · 2022
    Article
  9. Article
  10. Frontiers in immunology · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Manipulation of Host Cholesterol by Obligate Intracellular Bacteria.Frontiers in cellular and infection microbiology · 2017
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Secretome of obligate intracellular Rickettsia.FEMS microbiology reviews · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Basima Al-KhederyDepartment of Infectious Diseases and Pathology, College of Veterinary Medicine, University of Florida, Gainesville, FL, USA.
Anna M Lundgren
Snorre Stuen
Erik G Granquist
Ulrike G Munderloh
Curtis M Nelson
A Rick Alleman
Suman M Mahan
Anthony F Barbet
University of Florida · USNorwegian University of Life Sciences · NOUniversity of Minnesota · USPfizer (United States) · US

Funding

Tick-Mammal Interface of Human Granulocytic AnaplasmosisR01AI042792 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI MUNDERLOH, ULRIKE GERTRUD · 2005 to 2020
$8.7M
Evolution of chronic infection in Anasplasma phagocytophilumR01GM081714 · NIGMS · UNIVERSITY OF FLORIDA · PI BARBET, ANTHONY F. · 2007 to 2010
$1.7M
NIAID NIH HHS R01 AI042792NIGMS NIH HHS GM081714-03S1NIGMS NIH HHS R01 GM081714
6 · The paper itself

Abstract

backgroundAnaplasma phagocytophilum is an intracellular organism in the Order Rickettsiales that infects diverse animal species and is causing an emerging disease in humans, dogs and horses. Different strains have very different cell tropisms and virulence. For example, in the U.S., strains have been described that infect ruminants but not dogs or rodents. An intriguing question is how the strains of A. phagocytophilum differ and what different genome loci are involved in cell tropisms and/or virulence. Type IV secretion systems (T4SS) are responsible for translocation of substrates across the cell membrane by mechanisms that require contact with the recipient cell. They are especially important in organisms such as the Rickettsiales which require T4SS to aid colonization and survival within both mammalian and tick vector cells. We determined the structure of the T4SS in 7 strains from the U.S. and Europe and revised the sequence of the repetitive virB6 locus of the human HZ strain.

resultsAlthough in all strains the T4SS conforms to the previously described split loci for vir genes, there is great diversity within these loci among strains. This is particularly evident in the virB2 and virB6 which are postulated to encode the secretion channel and proteins exposed on the bacterial surface. VirB6-4 has an unusual highly repetitive structure and can have a molecular weight greater than 500,000. For many of the virs, phylogenetic trees position A. phagocytophilum strains infecting ruminants in the U.S. and Europe distant from strains infecting humans and dogs in the U.S.

conclusionsOur study reveals evidence of gene duplication and considerable diversity of T4SS components in strains infecting different animals. The diversity in virB2 is in both the total number of copies, which varied from 8 to 15 in the herein characterized strains, and in the sequence of each copy. The diversity in virB6 is in the sequence of each of the 4 copies in the single locus and the presence of varying numbers of repetitive units in virB6-3 and virB6-4. These data suggest that the T4SS should be investigated further for a potential role in strain virulence of A. phagocytophilum.

Indexed as

Amino Acid SequenceAnaplasma phagocytophilumAnimalsBacterial ProteinsCell MembraneDogsGenetic LociHumansMiceMolecular Sequence DataPeriplasmProtein SubunitsSpecies SpecificityBacterial ProteinsProtein Subunits

Identifiers

PMID23190684
PMCPMC3556328
OpenAlexW2126338552

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.