Evidence map›Paper›PMID 23190053›Full record

ArticleMolecular microbiology2013

Nus transcription elongation factors and RNase III modulate small ribosome subunit biogenesis in Escherichia coli.

Mikhail Bubunenko, Donald L Court, Abdalla Al Refaii, Shivalika Saxena, Alexey Korepanov, David I Friedman, Max E Gottesman, Jean-Hervé Alix

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

Mikhail BubunenkoFrederick National Laboratory for Cancer Research, Basic Research Program, SAIC-Frederick, Inc., Frederick, MD 21702, USA.
Donald L Court
Abdalla Al Refaii
Shivalika Saxena
Alexey Korepanov
David I Friedman
Max E Gottesman
Jean-Hervé Alix
Columbia University Irving Medical Center · USNational Cancer Institute · USFrederick National Laboratory for Cancer Research · USSorbonne Paris Cité · FRUniversité Paris Cité · FRUniversity of Michigan–Ann Arbor · US

Funding

Lambda Genetic Networks and Lambda Red-Mediated RecombinationZIABC010336 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI COURT, DONALD · 2009 to 2020
$18.9M
CONTROL OF TRANSCRIPTION TERMINATION IN E. COLIR01GM037219 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GOTTESMAN, MAX ELLIOT · 1986 to 2017
$6.6M
Recombineering: Chromosome Engineering by Homologous RecZ01BC010336 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI COURT, DONALD · 2000 to 2008
$2.8M
Control of Transcription Termination in E. coliR56GM037219 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GOTTESMAN, MAX ELLIOT · 2009 to 2009
$399k
HOST &VIRAL INFLUENCES ON PHAGE LAMBDA DEVELOPMENTR01AI011459 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FRIEDMAN, DAVID I · 1985 to 2000
$369k
Intramural NIH HHS Z01 BC010336Intramural NIH HHS ZIA BC010336NIAID NIH HHS AI11459-10NIGMS NIH HHS GM37219NIGMS NIH HHS R01 GM037219NIGMS NIH HHS R56 GM037219
6 · The paper itself

Abstract

Escherichia coli NusA and NusB proteins bind specific sites, such as those in the leader and spacer sequences that flank the 16S region of the ribosomal RNA transcript, forming a complex with RNA polymerase that suppresses Rho-dependent transcription termination. Although antitermination has long been the accepted role for Nus factors in rRNA synthesis, we propose that another major role for the Nus-modified transcription complex in rrn operons is as an RNA chaperone insuring co-ordination of 16S rRNA folding and RNase III processing that results in production of proper 30S ribosome subunits. This contrarian proposal is based on our studies of nusA and nusB cold-sensitive mutations that have altered translation and at low temperature accumulate 30S subunit precursors. Both phenotypes are suppressed by deletion of RNase III. We argue that these results are consistent with the idea that the nus mutations cause altered rRNA folding that leads to abnormal 30S subunits and slow translation. According to this idea, functional Nus proteins stabilize an RNA loop between their binding sites in the 5' RNA leader and on the transcribing RNA polymerase, providing a topological constraint on the RNA that aids normal rRNA folding and processing.

Indexed as

Gene Expression Regulation, BacterialTranscription, GeneticEscherichia coliEscherichia coli ProteinsGene DeletionModels, BiologicalModels, MolecularMutant ProteinsNucleic Acid ConformationPeptide Elongation FactorsRibonuclease IIIRibosome Subunits, SmallRNA, Ribosomal, 16STemperatureTranscriptional Elongation FactorsTranscription FactorsEscherichia coli ProteinsMutant ProteinsnusA protein, E coliNusB protein, E coliPeptide Elongation FactorsRibonuclease IIIRNA, Ribosomal, 16STranscriptional Elongation FactorsTranscription Factors

Identifiers

PMID23190053
PMCPMC3545037
OpenAlexW1887260861

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.