Evidence map›Paper›PMID 23187805›Full record

ArticleCell cycle (Georgetown, Tex.)2012

Loss of a membrane trafficking protein αSNAP induces non-canonical autophagy in human epithelia.

Nayden G Naydenov, Gianni Harris, Victor Morales, Andrei I Ivanov

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 2 pooled it
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 2 syntheses or guidelines pooled it, 41 citations in OpenAlex.

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  12. Imbalance of autophagy and apoptosis in intestinal epithelium lacking the vitamin D receptor.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
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  17. SNARE priming is essential for maturation of autophagosomes but not for their formation.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
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  20. A vesicle trafficking protein αSNAP regulates Paneth cell differentiation in vivo.Biochemical and biophysical research communications · 2017
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Nayden G NaydenovDepartment of Human and Molecular Genetics, Virginia Commonwealth University School of Medicine, Richmond, VA, USA.
Gianni Harris
Victor Morales
Andrei I Ivanov
University of Rochester · USVCU Massey Comprehensive Cancer CenterVirginia Commonwealth University · US

Funding

Junctional exocytosis and breakdown of the intestinal barrier in inflammationR01DK083968 · NIDDK · VIRGINIA COMMONWEALTH UNIVERSITY · PI IVANOV, ANDREI IVANOVICH · 2010 to 2014
$1.6M
Actin dynamics and regulation of epithelial barrier in intestinal inflammationR01DK084953 · NIDDK · VIRGINIA COMMONWEALTH UNIVERSITY · PI IVANOV, ANDREI IVANOVICH · 2010 to 2013
$1.3M
NIDDK NIH HHS R01 DK083968NIDDK NIH HHS R01 DK084953
6 · The paper itself

Abstract

Autophagy is a catabolic process that sequesters intracellular proteins and organelles within membrane vesicles called autophagosomes with their subsequent delivery to lyzosomes for degradation. This process involves multiple fusions of autophagosomal membranes with different vesicular compartments; however, the role of vesicle fusion in autophagosomal biogenesis remains poorly understood. This study addresses the role of a key vesicle fusion regulator, soluble N-ethylmaleimide-sensitive factor attachment protein α (αSNAP), in autophagy. Small interfering RNA-mediated downregulation of αSNAP expression in cultured epithelial cells stimulated the autophagic flux, which was manifested by increased conjugation of microtubule-associated protein light chain 3 (LC3-II) and accumulation of LC3-positive autophagosomes. This enhanced autophagy developed via a non-canonical mechanism that did not require beclin1-p150-dependent nucleation, but involved Atg5 and Atg7-mediated elongation of autophagosomal membranes. Induction of autophagy in αSNAP-depleted cells was accompanied by decreased mTOR signaling but appeared to be independent of αSNAP-binding partners, N-ethylmaleimide-sensitive factor and BNIP1. Loss of αSNAP caused fragmentation of the Golgi and downregulation of the Golgi-specific GTP exchange factors, GBF1, BIG1 and BIG2. Pharmacological disruption of the Golgi and genetic inhibition of GBF1 recreated the effects of αSNAP depletion on the autophagic flux. Our study revealed a novel role for αSNAP as a negative regulator of autophagy that acts by enhancing mTOR signaling and regulating the integrity of the Golgi complex.

Indexed as

AutophagyCell LineEpitheliumGolgi ApparatusGuanine Nucleotide Exchange FactorsHumansPhagosomesProto-Oncogene Proteins c-bcl-2RNA, Small InterferingSoluble N-Ethylmaleimide-Sensitive Factor Attachment ProteinsARFGEF1 protein, humanARFGEF2 protein, humanBNIP1 protein, humanGBF1 protein, humanGuanine Nucleotide Exchange FactorsProto-Oncogene Proteins c-bcl-2RNA, Small InterferingSoluble N-Ethylmaleimide-Sensitive Factor Attachment Proteins

Identifiers

PMID23187805
PMCPMC3562306
OpenAlexW2034275112

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.