Evidence map›Paper›PMID 23185594›Full record

ArticlePloS one2012

Biochemical characterization of diverse Stat5b-binding enhancers that mediate growth hormone-activated insulin-like growth factor-I gene transcription.

Ben Varco-Merth, Kasim Mirza, Damir T Alzhanov, Dennis J Chia, Peter Rotwein

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Defining human insulin-like growth factor I gene regulation.American journal of physiology. Endocrinology and metabolism · 2016
    Article
  6. Article
  7. Article
  8. Article
  9. Differential effects of STAT proteins on growth hormone-mediated IGF-I gene expression.American journal of physiology. Endocrinology and metabolism · 2014
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ben Varco-MerthDepartment of Biochemistry and Molecular Biology, Oregon Health & Science University, Portland, Oregon, United States of America.
Kasim Mirza
Damir T Alzhanov
Dennis J Chia
Peter Rotwein
Oregon Health & Science University · US

Funding

MULTIDISCIPLINARY TRAINING IN NEUROENDOCRINOLOGYT32DK007680 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI GOODMAN, RICHARD H. · 1991 to 2015
$6.8M
TRAINING IN ENDOCRINOLOGY, DIABETES, NUTRITIONT32DK007674 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI KLEIN, ROBERT FREDERICK · 1993 to 2013
$3.1M
Control of IGF-1 Gene Transcription by Growth HormoneR01DK069703 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI ROTWEIN, PETER S · 2006 to 2014
$2.8M
Oregon Child Health Research CenterK12HD057588 · NICHD · OREGON HEALTH & SCIENCE UNIVERSITY · PI NICHOLSON, HENRY STACY · 2008 to 2012
$1.5M
Mechanisms of IGF-I gene transcriptional activation by growth hormone signalingK08DK077897 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI CHIA, DENNIS J · 2007 to 2011
$718k
NICHD NIH HHS K12 HD057588NIDDK NIH HHS K08 DK077897NIDDK NIH HHS R01 DK069703NIDDK NIH HHS T32 DK007674NIDDK NIH HHS T32 DK007680
6 · The paper itself

Abstract

Many of the biological effects of growth hormone (GH) are mediated by insulin-like growth factor I (IGF-I), a 70-amino acid secreted peptide whose gene expression is rapidly induced by GH via the Stat5b transcription factor. We previously identified multiple evolutionarily conserved GH-activated chromosomal binding domains for Stat5b within the rat Igf1 locus, and proposed that they could regulate IGF-I gene activity. Here we investigate the biochemical and functional characteristics of these putative long-range transcriptional enhancers. Each element contained 2 or 3 individual Stat5b recognition sequences that could bind Stat5b in vitro, but with affinities that varied over a >100-fold range. Full transcriptional responsiveness to GH required that all Stat5b sites be intact within an individual enhancer. Replacement of a single lower-affinity Stat5b sequence with a higher-affinity one increased in vitro binding of Stat5b, and boosted transcriptional potency of the entire element to GH. As enhanced transcriptional activity involved changes in only one or two nucleotides within an enhancer DNA segment, there appears to be remarkable specificity and sensitivity in the ability of Stat5b to transform DNA binding activity into transcriptional function. Stat5b was able to stimulate the transcriptional activity of two enhancers in the absence of GH, indicating that individual Stat5b-regulated elements possess distinct functional features. We conclude that combinatorial interplay among multiple Stat5b-binding response elements with distinguishable biochemical properties is responsible for highly regulated control of IGF-I gene activity by GH.

Indexed as

Enhancer Elements, GeneticTranscription, GeneticAnimalsBinding SitesChlorocebus aethiopsCOS CellsGene Expression RegulationGenes, ReporterGenetic LociGrowth HormoneInsulin-Like Growth Factor IKineticsLuciferasesMiceProtein BindingRatsGrowth Hormoneinsulin-like growth factor-1, ratInsulin-Like Growth Factor ILuciferasesStat5b protein, ratSTAT5 Transcription Factor

Identifiers

PMID23185594
PMCPMC3502335
OpenAlexW2083502286

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.