Evidence map›Paper›PMID 23185413›Full record

ArticlePloS one2012

Whole-transcriptome sequencing identifies novel IRF2BP2-CDX1 fusion gene brought about by translocation t(1;5)(q42;q32) in mesenchymal chondrosarcoma.

Kaja B Nyquist, Ioannis Panagopoulos, Jim Thorsen, Lisbeth Haugom, Ludmila Gorunova, Bodil Bjerkehagen, Alexander Fosså, Marianne Guriby, Torfinn Nome, Ragnhild A Lothe and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 94 citations in OpenAlex.

  1. Review
  2. First Report of Primary Mesenchymal Chondrosarcoma of the Urinary Bladder.International journal of surgical pathology · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Primary osseous tumors of the orbit.Virchows Archiv : an international journal of pathology · 2025
    Review
  8. Article
  9. Article
  10. Case report: A mesenchymal chondrosarcoma with alternativePathology oncology research : POR · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Molecular testing of soft tissue tumors.Diagnostic cytopathology · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Kaja B NyquistSection for Cancer Cytogenetics, Institute for Medical Informatics, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway. k.b.nyquist@medisin.uio.no
Ioannis Panagopoulos
Jim Thorsen
Lisbeth Haugom
Ludmila Gorunova
Bodil Bjerkehagen
Alexander Fosså
Marianne Guriby
Torfinn Nome
Ragnhild A Lothe
Rolf I Skotheim
Sverre Heim
Francesca Micci
University of Oslo · NOOslo University Hospital · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mesenchymal chondrosarcomas (MCs) account for 3-10% of primary chondrosarcomas. The cytogenetic literature includes only ten such tumours with karyotypic information and no specific aberrations have been identified. Using a purely molecular genetic approach a HEY1-NCOA2 fusion gene was recently detected in 10 of 15 investigated MCs. The fusion probably arises through intrachromosomal rearrangement of chromosome arm 8 q. We report a new case of MC showing a t(1;5)(q42;q32) as the sole karyotypic aberration. Through FISH and whole transcriptome sequencing analysis we found a novel fusion between the IRF2BP2 gene and the transcription factor CDX1 gene arising from the translocation. The IRF2BP2-CDX1 has not formerly been described in human neoplasia. In our hospital's archives three more cases of MC were found, and we examined them looking for the supposedly more common HEY1-NCOA2 fusion, finding it in all three tumours but not in the case showing t(1;5) and IRF2BP2-CDX1 gene fusion. This demonstrates that genetic heterogeneity exists in mesenchymal chondrosarcoma.

Indexed as

TranscriptomeAdultBiopsyCarrier ProteinsChildChondrosarcoma, MesenchymalChromosome AberrationsChromosome BandingChromosomes, Artificial, BacterialDNA-Binding ProteinsFemaleHomeodomain ProteinsHumansIn Situ Hybridization, FluorescenceKaryotypingMiddle AgedCarrier ProteinsCDX1 protein, humanDNA-Binding ProteinsHomeodomain ProteinsIRF2BP2 protein, humanNuclear ProteinsTranscription Factors

Identifiers

PMID23185413
PMCPMC3504151
OpenAlexW2010512853

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.