Evidence map›Paper›PMID 23184980›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Capturing microRNA targets using an RNA-induced silencing complex (RISC)-trap approach.

Xiaolu A Cambronne, Rongkun Shen, Paul L Auer, Richard H Goodman

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 56 citations in OpenAlex.

  1. Identification ofProceedings of the National Academy of Sciences of the United States of America · 2025
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  12. Biotin-based Pulldown Assay to Validate mRNA Targets of Cellular miRNAs.Journal of visualized experiments : JoVE · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Xiaolu A CambronneVollum Institute, Oregon Health and Science University, Portland, OR 97239, USA. ang@ohsu.edu
Rongkun Shen
Paul L Auer
Richard H Goodman
Oregon Health & Science University · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZA

Funding

MicroRNA-132 regulation of dendritic growthR01MH094416 · NIMH · OREGON HEALTH & SCIENCE UNIVERSITY · PI GOODMAN, RICHARD H. · 2012 to 2016
$1.9M
A novel method for identifying microRNA targetsR21NS079317 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI GOODMAN, RICHARD H. · 2013 to 2014
$422k
Combinatorial microRNA regulation of cardiac transcription factorsR21HL111397 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI GOODMAN, RICHARD H. · 2012 to 2013
$414k
Targets of microRNA-132 in adult neurogenesisF32NS076094 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI CAMBRONNE, XIAOLU ANG · 2011 to 2012
$101k
NHLBI NIH HHS HL111397NHLBI NIH HHS R21 HL111397NIMH NIH HHS MH094416NIMH NIH HHS R01 MH094416NINDS NIH HHS F32 NS076094NINDS NIH HHS NS076094NINDS NIH HHS R21 NS079317
6 · The paper itself

Abstract

Identifying targets is critical for understanding the biological effects of microRNA (miRNA) expression. The challenge lies in characterizing the cohort of targets for a specific miRNA, especially when targets are being actively down-regulated in miRNA- RNA-induced silencing complex (RISC)-messengerRNA (mRNA) complexes. We have developed a robust and versatile strategy called RISCtrap to stabilize and purify targets from this transient interaction. Its utility was demonstrated by determining specific high-confidence target datasets for miR-124, miR-132, and miR-181 that contained known and previously unknown transcripts. Two previously unknown miR-132 targets identified with RISCtrap, adaptor protein CT10 regulator of kinase 1 (CRK1) and tight junction-associated protein 1 (TJAP1), were shown to be endogenously regulated by miR-132 in adult mouse forebrain. The datasets, moreover, differed in the number of targets and in the types and frequency of microRNA recognition element (MRE) motifs, thus revealing a previously underappreciated level of specificity in the target sets regulated by individual miRNAs.

Indexed as

AnimalsBase SequenceBinding SitesHEK293 CellsHumansMacromolecular SubstancesMiceMicroRNAsProtein SubunitsProto-Oncogene Proteins c-crkRNA-Induced Silencing ComplexRNA, MessengerSequence DeletionTight Junction ProteinsMacromolecular SubstancesMicroRNAsMIRN124 microRNA, humanMIRN132 microRNA, humanMIrn181 microRNA, humanProtein SubunitsProto-Oncogene Proteins c-crkRNA-Induced Silencing ComplexRNA, MessengerTight Junction ProteinsTJAP1 protein, human

Identifiers

PMID23184980
PMCPMC3528561
OpenAlexW1980801852

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.