Evidence map›Paper›PMID 23184965›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Structural genes of wheat and barley 5-methylcytosine DNA glycosylases and their potential applications for human health.

Shanshan Wen, Nuan Wen, Jinsong Pang, Gregor Langen, Rhoda A T Brew-Appiah, Jaime H Mejias, Claudia Osorio, Mingming Yang, Richa Gemini, Charles P Moehs and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
9.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 99 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Base Excision DNA Repair in Plants:International journal of molecular sciences · 2023
    Review
  6. Loss of Function of the RRMF Domain in OsROS1a Causes Sterility in Rice (International journal of molecular sciences · 2022
    Article
  7. Review
  8. Article
  9. Article
  10. Promoter DNA hypermethylation ofJournal of advanced research · 2022
    Article
  11. Review
  12. Targeting Induced Local Lesions in the WheatFrontiers in nutrition · 2022
    Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Directed-Mutagenesis ofFrontiers in nutrition · 2020
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Shanshan WenDepartment of Crop and Soil Sciences, Washington State University, Pullman, WA 99164, USA.
Nuan Wen
Jinsong Pang
Gregor Langen
Rhoda A T Brew-Appiah
Jaime H Mejias
Claudia Osorio
Mingming Yang
Richa Gemini
Charles P Moehs
Robert S Zemetra
Karl-Heinz Kogel
Bao Liu
Xingzhi Wang
Diter von Wettstein
Sachin Rustgi
Washington State University · USNortheast Normal University · CNUniversity of Giessen · DEArcadia Biosciences (United States) · USOregon State University · US

Funding

TILLING wheat for reduced celiac disease causing proteinsR42DK072721 · NIDDK · ARCADIA BIOSCIENCES, INC. · PI MOEHS, CHARLES PAUL · 2009 to 2010
$922k
Prevention of Celiac Disease by Transgenic Removal of Prolamin T-cell EpitopesR01GM080749 · NIGMS · WASHINGTON STATE UNIVERSITY · PI VON WETTSTEIN, DITER H · 2008 to 2011
$802k
NIDDK NIH HHS 2R42DK072721-02NIDDK NIH HHS R42 DK072721NIGMS NIH HHS GM080749-01A2NIGMS NIH HHS R01 GM080749
6 · The paper itself

Abstract

Wheat supplies about 20% of the total food calories consumed worldwide and is a national staple in many countries. Besides being a key source of plant proteins, it is also a major cause of many diet-induced health issues, especially celiac disease. The only effective treatment for this disease is a total gluten-free diet. The present report describes an effort to develop a natural dietary therapy for this disorder by transcriptional suppression of wheat DEMETER (DME) homeologs using RNA interference. DME encodes a 5-methylcytosine DNA glycosylase responsible for transcriptional derepression of gliadins and low-molecular-weight glutenins (LMWgs) by active demethylation of their promoters in the wheat endosperm. Previous research has demonstrated these proteins to be the major source of immunogenic epitopes. In this research, barley and wheat DME genes were cloned and localized on the syntenous chromosomes. Nucleotide diversity among DME homeologs was studied and used for their virtual transcript profiling. Functional conservation of DME enzyme was confirmed by comparing the motif and domain structure within and across the plant kingdom. Presence and absence of CpG islands in prolamin gene sequences was studied as a hallmark of hypo- and hypermethylation, respectively. Finally the epigenetic influence of DME silencing on accumulation of LMWgs and gliadins was studied using 20 transformants expressing hairpin RNA in their endosperm. These transformants showed up to 85.6% suppression in DME transcript abundance and up to 76.4% reduction in the amount of immunogenic prolamins, demonstrating the possibility of developing wheat varieties compatible for the celiac patients.

Indexed as

Genes, PlantAmino Acid SequenceBase SequenceCeliac DiseaseChromosome MappingCloning, MolecularCpG IslandsDietary ProteinsDiet, Gluten-FreeDNA GlycosylasesDNA, PlantGenetic VariationHordeumHumansModels, MolecularMolecular Sequence Data5-methylcytosine-DNA glycosylaseDietary ProteinsDNA GlycosylasesDNA, PlantPlant ProteinsProlamins

Identifiers

PMID23184965
PMCPMC3528507
OpenAlexW2070237426

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.