ArticlePlant physiology2013
The perennial ryegrass GenomeZipper: targeted use of genome resources for comparative grass genomics.
Article in Plant physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.
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Who cites it
45 citing papers in PubMed.
- Assembly and Characterization of the First Complete Mitochondrial Genome of Tussilago farfara L.: Insights into Biological Functions and Phylogenetic Relationships within the Asteraceae Family.Biochemical genetics · 2026Article
- Assembly and comparison of organelle genomes for investigating the maternal inheritance in Peganum (Nitrariaceae).BMC genomics · 2026Article
- Chromosome-level haplotype-resolved genome assembly provides insights into the highly heterozygous genome of Italian ryegrass (Lolium multiflorum Lam.).The plant genome · 2025Article
- Complete mitogenome characteristics and phylogenetic analysis of traditional Chinese medicinal plant Tinospora sagittata (Oliv.) Gagnep. from the Menispermaceae family.BMC plant biology · 2025Article
- Characterization and phylogenetic analysis of the first complete mitochondrial genome sequence of threeFrontiers in plant science · 2025Article
- Comprehensive analysis of the first complete mitogenome and plastome of a traditional Chinese medicine Viola diffusa.BMC genomics · 2024Article
- The assembly and comparative analysis of the first complete mitogenome ofFrontiers in plant science · 2024Article
- An improved chromosome-level genome assembly of perennial ryegrass (GigaByte (Hong Kong, China) · 2024Article
- Barley TAPETAL DEVELOPMENT and FUNCTION1 (HvTDF1) gene reveals conserved and unique roles in controlling anther tapetum development in dicot and monocot plants.The New phytologist · 2023Article
- Chromosome-scale assembly and annotation of the perennial ryegrass genome.BMC genomics · 2022Article
- Comparative Study of Starch Phosphorylase Genes and Encoded Proteins in Various Monocots and Dicots with Emphasis on Maize.International journal of molecular sciences · 2022Article
- Article
- Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly.Genome biology and evolution · 2021Article
- Global Changes in AsexualMicroorganisms · 2021Article
- Perennial Ryegrass Contains Gluten-Like Proteins That Could Contaminate Cereal Crops.Frontiers in nutrition · 2021Article
- Environmentally Friendly Quinolones Design for a Two-Way Choice between Biotoxicity and Genotoxicity through Double-Activity 3D-QSAR Model Coupled with the Variation Weighting Method.International journal of environmental research and public health · 2020Article
- Pooled DNA sequencing to identify SNPs associated with a major QTL for bacterial wilt resistance in Italian ryegrass (Lolium multiflorum Lam.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- A large-scale metabolomics study to harness chemical diversity and explore biochemical mechanisms in ryegrass.Communications biology · 2019Article
- Genetic Loci Governing Androgenic Capacity in Perennial Ryegrass (G3 (Bethesda, Md.) · 2018Article
- Genomic prediction of crown rust resistance in Lolium perenne.BMC genetics · 2018Article
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Authors and funding
8 authors.
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Abstract
Whole-genome sequences established for model and major crop species constitute a key resource for advanced genomic research. For outbreeding forage and turf grass species like ryegrasses (Lolium spp.), such resources have yet to be developed. Here, we present a model of the perennial ryegrass (Lolium perenne) genome on the basis of conserved synteny to barley (Hordeum vulgare) and the model grass genome Brachypodium (Brachypodium distachyon) as well as rice (Oryza sativa) and sorghum (Sorghum bicolor). A transcriptome-based genetic linkage map of perennial ryegrass served as a scaffold to establish the chromosomal arrangement of syntenic genes from model grass species. This scaffold revealed a high degree of synteny and macrocollinearity and was then utilized to anchor a collection of perennial ryegrass genes in silico to their predicted genome positions. This resulted in the unambiguous assignment of 3,315 out of 8,876 previously unmapped genes to the respective chromosomes. In total, the GenomeZipper incorporates 4,035 conserved grass gene loci, which were used for the first genome-wide sequence divergence analysis between perennial ryegrass, barley, Brachypodium, rice, and sorghum. The perennial ryegrass GenomeZipper is an ordered, information-rich genome scaffold, facilitating map-based cloning and genome assembly in perennial ryegrass and closely related Poaceae species. It also represents a milestone in describing synteny between perennial ryegrass and fully sequenced model grass genomes, thereby increasing our understanding of genome organization and evolution in the most important temperate forage and turf grass species.
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