Evidence map›Paper›PMID 23182423›Full record

ArticleDNA repair2013

Genomic deletions and point mutations induced in Saccharomyces cerevisiae by the trinucleotide repeats (GAA·TTC) associated with Friedreich's ataxia.

Wei Tang, Margaret Dominska, Malgorzata Gawel, Patricia W Greenwell, Thomas D Petes

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
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  4. Creation and resolution of non-B-DNA structural impediments during replication.Critical reviews in biochemistry and molecular biology · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Review
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  11. Article
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  18. Article
  19. Genome rearrangements caused by interstitial telomeric sequences in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Wei TangDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC 27710, USA.
Margaret Dominska
Malgorzata Gawel
Patricia W Greenwell
Thomas D Petes
Duke University · US

Funding

RECOMBINATION IN YEASTR01GM024110 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI PETES, THOMAS · 1985 to 2015
$6.1M
INSTABILITY OF SIMPLE REPETITIVE DNA SEQUENCES IN YEASTR01GM052319 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI PETES, THOMAS · 1995 to 2015
$4.9M
Environmental and genetic regulation of copy number variation (CNV)RC1ES018091 · NIEHS · DUKE UNIVERSITY · PI PETES, THOMAS · 2009 to 2010
$993k
NIEHS NIH HHS RC1 ES018091NIGMS NIH HHS GM24110NIGMS NIH HHS GM52319NIGMS NIH HHS R01 GM024110NIGMS NIH HHS R01 GM052319
6 · The paper itself

Abstract

Expansion of certain trinucleotide repeats causes several types of human diseases, and such tracts are associated with the formation of deletions and other types of genetic rearrangements in Escherichia coli, yeast, and mammalian cells. Below, we show that long (230 repeats) tracts of the trinucleotide associated with Friedreich's ataxia (GAA·TTC) stimulate both large (>50 bp) deletions and point mutations in a reporter gene located more than 1 kb from the repetitive tract. Sequence analysis of deletion breakpoints indicates that the deletions reflect non-homologous end joining of double-stranded DNA breaks (DSBs) initiated in the tract. The tract-induced point mutations appear to reflect a different mechanism involving single-strand annealing of DNA molecules generated by DSBs within the tract, followed by filling-in of single-stranded gaps by the error-prone DNA polymerase zeta.

Indexed as

Gene DeletionGenome, FungalPoint MutationTrinucleotide RepeatsDNA Breaks, Double-StrandedDNA-Directed DNA PolymeraseDNA End-Joining RepairDNA, Single-StrandedFriedreich AtaxiaGenes, ReporterHumansSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDNA-Directed DNA PolymeraseDNA polymerase zetaDNA, Single-StrandedSaccharomyces cerevisiae Proteins

Identifiers

PMID23182423
PMCPMC3534863
OpenAlexW1982775063

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.