Evidence map›Paper›PMID 23181687›Full record

ArticleACS nano2012

Quantum dot targeting with lipoic acid ligase and HaloTag for single-molecule imaging on living cells.

Daniel S Liu, William S Phipps, Ken H Loh, Mark Howarth, Alice Y Ting

Abstract read
In one paragraph

Article in ACS nano, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Review
  3. Lipoic acid attachment to proteins: stimulating new developments.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  4. Article
  5. Recent biomedical advances enabled by HaloTag technology.Biocell : official journal of the Sociedades Latinoamericanas de Microscopia Electronica ... et. al · 2022
    Article
  6. Article
  7. Article
  8. Engineering of a Red Fluorogenic Protein/Merocyanine Complex for Live-Cell Imaging.Chembiochem : a European journal of chemical biology · 2020
    Article
  9. Article
  10. Review
  11. Sensing with photoluminescent semiconductor quantum dots.Methods and applications in fluorescence · 2019
    Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Computational design of a red fluorophore ligase for site-specific protein labeling in living cells.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Daniel S LiuDepartment of Chemistry, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Room 18-496, Cambridge, Massachusetts 02139, USA.
William S Phipps
Ken H Loh
Mark Howarth
Alice Y Ting
Massachusetts Institute of Technology · US

Funding

Specific protein labeling in cells with engineered BirAR01GM072670 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI TING, ALICE Y · 2005 to 2013
$2.7M
NIGMS NIH HHS R01 GM072670
6 · The paper itself

Abstract

We present a methodology for targeting quantum dots to specific proteins on living cells in two steps. In the first step, Escherichia coli lipoic acid ligase (LplA) site-specifically attaches 10-bromodecanoic acid onto a 13 amino acid recognition sequence that is genetically fused to a protein of interest. In the second step, quantum dots derivatized with HaloTag, a modified haloalkane dehalogenase, react with the ligated bromodecanoic acid to form a covalent adduct. We found this targeting method to be specific, fast, and fully orthogonal to a previously reported and analogous quantum dot targeting method using E. coli biotin ligase and streptavidin. We used these two methods in combination for two-color quantum dot visualization of different proteins expressed on the same cell or on neighboring cells. Both methods were also used to track single molecules of neurexin, a synaptic adhesion protein, to measure its lateral diffusion in the presence of neuroligin, its trans-synaptic adhesion partner.

Indexed as

Quantum DotsBinding SitesBiocatalysisCell SurvivalDecanoic AcidsEscherichia coliHEK293 CellsHeLa CellsHumansHydrolasesLigasesMolecular ImagingPeptide FragmentsSubstrate SpecificityThioctic Aciddecanoic acidDecanoic Acidshaloalkane dehalogenaseHydrolasesLigasesPeptide FragmentsThioctic Acid

Identifiers

PMID23181687
PMCPMC3528850
OpenAlexW2129447825

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.