ArticleNucleic acids research2013
DDBJ new system and service refactoring.
Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
22 citing papers in PubMed.
- BRD9 determines the cell fate of hematopoietic stem cells by regulating chromatin state.Nature communications · 2023Article
- Building cloud computing environments for genome analysis in Japan.Human genome variation · 2022Review
- Nintedanib induces gene expression changes in the lung of induced-rheumatoid arthritis-associated interstitial lung disease mice.PloS one · 2022Article
- DDBJ Database updates and computational infrastructure enhancement.Nucleic acids research · 2020Article
- DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data.Nucleic acids research · 2019Article
- Integrating the Ribonucleic Acid Sequencing Data From Various Studies for Exploring the Multiple Sclerosis-Related Long Noncoding Ribonucleic Acids and Their Functions.Frontiers in genetics · 2019Article
- DNA Data Bank of Japan: 30th anniversary.Nucleic acids research · 2018Article
- ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index.Plant & cell physiology · 2018Article
- Genome analysis of Diploscapter coronatus: insights into molecular peculiarities of a nematode with parthenogenetic reproduction.BMC genomics · 2017Article
- DNA Data Bank of Japan.Nucleic acids research · 2017Article
- FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.Journal of biomedical semantics · 2016Article
- DNA data bank of Japan (DDBJ) progress report.Nucleic acids research · 2016Article
- ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression.Plant & cell physiology · 2016Article
- Draft Genome Sequence of the Archiascomycetous Yeast Saitoella complicata.Genome announcements · 2015Article
- BioDB extractor: customized data extraction system for commonly used bioinformatics databases.BioData mining · 2015Article
- The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.Nucleic acids research · 2015Article
- BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.Journal of biomedical semantics · 2014Article
- GeneProf data: a resource of curated, integrated and reusable high-throughput genomics experiments.Nucleic acids research · 2014Article
- GenBank.Nucleic acids research · 2014Article
- Assembly information services in the European Nucleotide Archive.Nucleic acids research · 2014Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The DNA data bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp) maintains a primary nucleotide sequence database and provides analytical resources for biological information to researchers. This database content is exchanged with the US National Center for Biotechnology Information (NCBI) and the European Bioinformatics Institute (EBI) within the framework of the International Nucleotide Sequence Database Collaboration (INSDC). Resources provided by the DDBJ include traditional nucleotide sequence data released in the form of 27 316 452 entries or 16 876 791 557 base pairs (as of June 2012), and raw reads of new generation sequencers in the sequence read archive (SRA). A Japanese researcher published his own genome sequence via DDBJ-SRA on 31 July 2012. To cope with the ongoing genomic data deluge, in March 2012, our computer previous system was totally replaced by a commodity cluster-based system that boasts 122.5 TFlops of CPU capacity and 5 PB of storage space. During this upgrade, it was considered crucial to replace and refactor substantial portions of the DDBJ software systems as well. As a result of the replacement process, which took more than 2 years to perform, we have achieved significant improvements in system performance.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.