ArticleNucleic acids research2013
WormQTL--public archive and analysis web portal for natural variation data in Caenorhabditis spp.
Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- A bioinformatics approach to elucidate conserved genes and pathways in C. elegans as an animal model for cardiovascular research.Scientific reports · 2024Article
- The effect of developmental variation on expression QTLs in a multi parental Caenorhabditis elegans population.G3 (Bethesda, Md.) · 2024Article
- The genetics of gene expression in a Caenorhabditis elegans multiparental recombinant inbred line population.G3 (Bethesda, Md.) · 2021Article
- WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans.Database : the journal of biological databases and curation · 2020Article
- Article
- Ras/MAPK Modifier Loci Revealed by eQTL inG3 (Bethesda, Md.) · 2017Article
- Article
- reGenotyper: Detecting mislabeled samples in genetic data.PloS one · 2017Article
- Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans.Molecular & cellular proteomics : MCP · 2016Article
- Contrasting invertebrate immune defense behaviors caused by a single gene, the Caenorhabditis elegans neuropeptide receptor gene npr-1.BMC genomics · 2016Article
- Natural Genetic Variation Influences Protein Abundances in C. elegans Developmental Signalling Pathways.PloS one · 2016Article
- Collective effects of common SNPs in foraging decisions in Caenorhabditis elegans and an integrative method of identification of candidate genes.Scientific reports · 2015Article
- Genotype-dependent lifespan effects in peptone deprived Caenorhabditis elegans.Scientific reports · 2015Article
- Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856.Genetics · 2015Article
- Systemic Regulation of RAS/MAPK Signaling by the Serotonin Metabolite 5-HIAA.PLoS genetics · 2015Article
- Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains.BMC bioinformatics · 2015Article
- On predicting regulatory genes by analysis of functional networks in C. elegans.BioData mining · 2015Article
- Widespread genomic incompatibilities in Caenorhabditis elegans.G3 (Bethesda, Md.) · 2014Article
- Loss-of-function of β-catenin bar-1 slows development and activates the Wnt pathway in Caenorhabditis elegans.Scientific reports · 2014Article
- A rapid and massive gene expression shift marking adolescent transition in C. elegans.Scientific reports · 2014Article
Corrections and comments
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Authors and funding
17 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Here, we present WormQTL (http://www.wormqtl.org), an easily accessible database enabling search, comparative analysis and meta-analysis of all data on variation in Caenorhabditis spp. Over the past decade, Caenorhabditis elegans has become instrumental for molecular quantitative genetics and the systems biology of natural variation. These efforts have resulted in a valuable amount of phenotypic, high-throughput molecular and genotypic data across different developmental worm stages and environments in hundreds of C. elegans strains. WormQTL provides a workbench of analysis tools for genotype-phenotype linkage and association mapping based on but not limited to R/qtl (http://www.rqtl.org). All data can be uploaded and downloaded using simple delimited text or Excel formats and are accessible via a public web user interface for biologists and R statistic and web service interfaces for bioinformaticians, based on open source MOLGENIS and xQTL workbench software. WormQTL welcomes data submissions from other worm researchers.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.