ArticleNucleic acids research2013
PeroxiBase: a database for large-scale evolutionary analysis of peroxidases.
Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.
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Who cites it
65 citing papers in PubMed.
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- Validating the utility of APEX2 for protein localization at nanometre resolution in plant cells.Plant biotechnology journal · 2025Article
- Biochemical and Structural Characterisation of a Bacterial Lactoperoxidase.Chembiochem : a European journal of chemical biology · 2025Article
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- Construction of lignan glycosides biosynthetic network in Escherichia coli using mutltienzyme modules.Microbial cell factories · 2024Article
- Biochemical, Biophysical, and Structural Analysis of an Unusual DyP from the ExtremophileMolecules (Basel, Switzerland) · 2024Article
- Bacterial transformation of lignin: key enzymes and high-value products.Biotechnology for biofuels and bioproducts · 2024Review
- The Class III Peroxidase geneFrontiers in plant science · 2024Article
- CsBZIP40 confers resistance against citrus bacterial canker by repressing CsWRKY43-CsPrx53/CsSOD13 cascade mediated ROS scavenging.Horticulture research · 2023Article
- A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids.Plant physiology · 2023Article
- Genome analysis and genomic comparison of a fungal cultivar of the nonsocial weevilFrontiers in microbiology · 2023Article
- Comparative transcriptomic analysis and functional characterization reveals that the class III peroxidase geneFrontiers in plant science · 2023Article
- Genetic Determinants of Fiber-Associated Traits in Flax Identified by Omics Data Integration.International journal of molecular sciences · 2022Article
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- Genome Analysis of the Broad Host Range NecrotrophFrontiers in plant science · 2022Article
- Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic HyphomyceteJournal of fungi (Basel, Switzerland) · 2021Article
- Ectomycorrhizal access to organic nitrogen mediates CONature communications · 2021Article
- Article
- Characterization of Class V DyP-Type Peroxidase SaDyP1 fromInternational journal of molecular sciences · 2021Article
- Changes in the Cell Wall Proteome of Leaves in Response to High Temperature Stress inInternational journal of molecular sciences · 2021Article
5 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The PeroxiBase (http://peroxibase.toulouse.inra.fr/) is a specialized database devoted to peroxidases' families, which are major actors of stress responses. In addition to the increasing number of sequences and the complete modification of the Web interface, new analysis tools and functionalities have been developed since the previous publication in the NAR database issue. Nucleotide sequences and graphical representation of the gene structure can now be included for entries containing genomic cross-references. An expert semi-automatic annotation strategy is being developed to generate new entries from genomic sequences and from EST libraries. Plus, new internal and automatic controls have been included to improve the quality of the entries. To compare gene structure organization among families' members, two new tools are available, CIWOG to detect common introns and GECA to visualize gene structure overlaid with sequence conservation. The multicriteria search tool was greatly improved to allow simple and combined queries. After such requests or a BLAST search, different analysis processes are suggested, such as multiple alignments with ClustalW or MAFFT, a platform for phylogenetic analysis and GECA's display in association with a phylogenetic tree. Finally, we updated our family specific profiles implemented in the PeroxiScan tool and made new profiles to consider new sub-families.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.