Evidence map›Paper›PMID 23178280›Full record

ArticleToxicology and applied pharmacology2013

Modulation of farnesoid X receptor results in post-translational modification of poly (ADP-ribose) polymerase 1 in the liver.

Yan Zhu, Guodong Li, Yafeng Dong, Helen H Zhou, Bo Kong, Lauren M Aleksunes, Jason R Richardson, Fei Li, Grace L Guo

Abstract readValidation Study
In one paragraph

Article in Toxicology and applied pharmacology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Yan ZhuDepartment of General Surgery, Xuanwu Hospital, Capital Medical University, Beijing, PR China.
Guodong Li
Yafeng Dong
Helen H Zhou
Bo Kong
Lauren M Aleksunes
Jason R Richardson
Fei Li
Grace L Guo
Rutgers, The State University of New Jersey · USUniversity of Kansas Medical Center · USCapital Medical University · CNFourth Affiliated Hospital of Harbin Medical University · CNJohnson University · US

Funding

Translational Research Support CoreP30ES005022 · NIEHS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI ROBERT John LAUMBACH · 1988 to 2026
$47.4M
Tissue specific mechanism of FXR in suppressing bile-acid synthesisR01DK081343 · NIDDK · UNIVERSITY OF KANSAS MEDICAL CENTER · PI GUO, GRACE L · 2008 to 2011
$1.3M
FXR, nuclear receptors, and transcriptional regulation of liver homeostasisR56DK090036 · NIDDK · UNIVERSITY OF KANSAS MEDICAL CENTER · PI GUO, GRACE L · 2011 to 2011
$328k
Chronic Hypoxia Mediated Fetal Brain Injury is Associated with a Rho/Rho-kinaseR03HD062734 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI DONG, YAFENG · 2010 to 2011
$147k
NICHD NIH HHS R03 HD062734NICHD NIH HHS R03-HD062734NIDDK NIH HHS DK081343NIDDK NIH HHS DK090036NIDDK NIH HHS R01 DK081343NIDDK NIH HHS R56 DK090036NIEHS NIH HHS ES005022NIEHS NIH HHS P30 ES005022
6 · The paper itself

Abstract

The farnesoid X receptor (FXR) is a bile acid-activated transcription factor belonging to the nuclear receptor superfamily. FXR deficiency in mice results in cholestasis, metabolic disorders, and tumorigenesis in liver and intestine. FXR is known to contribute to pathogenesis by regulating gene transcription; however, changes in the post-transcriptional modification of proteins associated with FXR modulation have not been determined. In the current study, proteomic analysis of the livers of wild-type (WT) and FXR knockout (FXR-KO) mice treated with a FXR synthetic ligand or vehicle was performed. The results identified five proteins as novel FXR targets. Since FXR deficiency in mice leads to liver tumorigenesis, poly (ADP-ribose) polymerase family, member 1 (Parp1) that is important for DNA repair, was validated in the current study by quantitative real-time PCR, and 1- and 2-dimensional gel electrophoresis/western blot. The results showed that Parp1 mRNA levels were not altered by FXR genetic status or by agonist treatment. However, total Parp1 protein levels were increased in FXR-KO mice as early as 3 month old. Interestingly, total Parp1 protein levels were increased in WT mice in an age-dependent manner (from 3 to 18 months), but not in FXR-KO mice. Finally, activation of FXR in WT mice resulted in reduction of phosporylated Parp1 protein in the liver without affecting total Parp1 protein levels. In conclusion, this study reveals that FXR genetic status and agonist treatment affects basal levels and phosphorylation state of Parp1, respectively. These alterations, in turn, may be associated with the hepatobiliary alterations observed in FXR-KO mice and participate in FXR agonist-induced protection in the liver.

Indexed as

Age FactorsAnimalsBlotting, WesternDNA RepairElectrophoresisElectrophoresis, Gel, Two-DimensionalLiverMaleMiceMice, Inbred C57BLMice, KnockoutPhosphorylationPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesProtein Processing, Post-TranslationalProteomicsParp1 protein, mousePoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesReceptor, Farnesoid X-ActivatedReceptors, Cytoplasmic and Nuclear

Identifiers

PMID23178280
PMCPMC3774161
OpenAlexW2041078575

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.