ArticleBiology direct2012
The origin of life is a spatially localized stochastic transition.
Article in Biology direct, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Compositional memory matters for early molecular systems.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- Complex and Messy Prebiotic Chemistry: Obstacles and Opportunities for an RNA World.Life (Basel, Switzerland) · 2026Review
- Evolution from Composome to RNA Replicase.Life (Basel, Switzerland) · 2026Review
- Spatial structure supports diversity in prebiotic autocatalytic chemical ecosystems.Npj complexity · 2025Article
- Origins of Life: The Protein Folding Problem all over again?Proceedings of the National Academy of Sciences of the United States of America · 2024Article
- The prebiotic emergence of biological evolution.Royal Society open science · 2024Article
- Hitting Times of Some Critical Events in RNA Origins of Life.Life (Basel, Switzerland) · 2021Article
- The automatic parameter-exploration with a machine-learning-like approach: Powering the evolutionary modeling on the origin of life.PLoS computational biology · 2021Article
- When Is a Reaction Network a Metabolism? Criteria for Simple Metabolisms That Support Growth and Division of Protocells.Life (Basel, Switzerland) · 2021Article
- Thresholds in Origin of Life Scenarios.iScience · 2020Review
- Slightly beneficial genes are retained by bacteria evolving DNA uptake despite selfish elements.eLife · 2020Article
- Survival of RNA Replicators is much Easier in Protocells than in Surface-Based, Spatial Systems.Life (Basel, Switzerland) · 2019Article
- An Experimental Framework for Generating Evolvable Chemical Systems in the Laboratory.Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life · 2017Article
- Ecology and Evolution in the RNA World Dynamics and Stability of Prebiotic Replicator Systems.Life (Basel, Switzerland) · 2017Review
- Chemical Evolution and the Evolutionary Definition of Life.Journal of molecular evolution · 2017Article
- Co-operation between Polymerases and Nucleotide Synthetases in the RNA World.PLoS computational biology · 2016Article
- Synthetic transitions: towards a new synthesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016Review
- The Effect of Limited Diffusion and Wet-Dry Cycling on Reversible Polymerization Reactions: Implications for Prebiotic Synthesis of Nucleic Acids.Life (Basel, Switzerland) · 2016Article
- The RNA World: molecular cooperation at the origins of life.Nature reviews. Genetics · 2015Review
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundLife depends on biopolymer sequences as catalysts and as genetic material. A key step in the Origin of Life is the emergence of an autocatalytic system of biopolymers. Here we study computational models that address the way a living autocatalytic system could have emerged from a non-living chemical system, as envisaged in the RNA World hypothesis.
resultsWe consider (i) a chemical reaction system describing RNA polymerization, and (ii) a simple model of catalytic replicators that we call the Two's Company model. Both systems have two stable states: a non-living state, characterized by a slow spontaneous rate of RNA synthesis, and a living state, characterized by rapid autocatalytic RNA synthesis. The origin of life is a transition between these two stable states. The transition is driven by stochastic concentration fluctuations involving relatively small numbers of molecules in a localized region of space. These models are simulated on a two-dimensional lattice in which reactions occur locally on single sites and diffusion occurs by hopping of molecules to neighbouring sites.
conclusionsIf diffusion is very rapid, the system is well-mixed. The transition to life becomes increasingly difficult as the lattice size is increased because the concentration fluctuations that drive the transition become relatively smaller when larger numbers of molecules are involved. In contrast, when diffusion occurs at a finite rate, concentration fluctuations are local. The transition to life occurs in one local region and then spreads across the rest of the surface. The transition becomes easier with larger lattice sizes because there are more independent regions in which it could occur. The key observations that apply to our models and to the real world are that the origin of life is a rare stochastic event that is localized in one region of space due to the limited rate of diffusion of the molecules involved and that the subsequent spread across the surface is deterministic. It is likely that the time required for the deterministic spread is much shorter than the waiting time for the origin, in which case life evolves only once on a planet, and then rapidly occupies the whole surface.
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