Evidence map›Paper›PMID 23175765›Full record

ArticleThe Journal of infectious diseases2013

Pneumococcal capsular switching: a historical perspective.

Kelly L Wyres, Lotte M Lambertsen, Nicholas J Croucher, Lesley McGee, Anne von Gottberg, Josefina Liñares, Michael R Jacobs, Karl G Kristinsson, Bernard W Beall, Keith P Klugman and 4 more

Erratum issuedAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 104 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Influenza A Virus Coinfection AltersbioRxiv : the preprint server for biology · 2026
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  9. Genomic epidemiology ofFrontiers in cellular and infection microbiology · 2026
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  11. Genomic analysis of theMicrobial genomics · 2025
    Article
  12. Article
  13. Article
  14. Comparative Genotyping of Malaysian Clinical Isolates ofThe Malaysian journal of medical sciences : MJMS · 2025
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Review

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

14 authors.

Kelly L WyresDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
Lotte M Lambertsen
Nicholas J Croucher
Lesley McGee
Anne von Gottberg
Josefina Liñares
Michael R Jacobs
Karl G Kristinsson
Bernard W Beall
Keith P Klugman
Julian Parkhill
Regine Hakenbeck
Stephen D Bentley
Angela B Brueggemann

Funding

Wellcome TrustWellcome Trust 083511/Z/07/ZWellcome Trust 098051
6 · The paper itself

Abstract

backgroundChanges in serotype prevalence among pneumococcal populations result from both serotype replacement and serotype (capsular) switching. Temporal changes in serotype distributions are well documented, but the contribution of capsular switching to such changes is unknown. Furthermore, it is unclear to what extent vaccine-induced selective pressures drive capsular switching.

methodsSerotype and multilocus sequence typing data for 426 pneumococci dated from 1937 through 2007 were analyzed. Whole-genome sequence data for a subset of isolates were used to investigate capsular switching events.

resultsWe identified 36 independent capsular switch events, 18 of which were explored in detail with whole-genome sequence data. Recombination fragment lengths were estimated for 11 events and ranged from approximately 19.0 kb to ≥ 58.2 kb. Two events took place no later than 1960, and the imported DNA included the capsular locus and the nearby penicillin-binding protein genes pbp2x and pbp1a.

conclusionsCapsular switching has been a regular occurrence among pneumococcal populations throughout the past 7 decades. Recombination of large DNA fragments (>30 kb), sometimes including the capsular locus and penicillin-binding protein genes, predated both vaccine introduction and widespread antibiotic use. This type of recombination has likely been an intrinsic feature throughout the history of pneumococcal evolution.

Indexed as

Bacterial CapsulesBase SequenceEvolution, MolecularGenes, BacterialGenetic LociHumansMolecular Sequence DataMultilocus Sequence TypingSequence AlignmentSerotypingStreptococcus pneumoniae

Identifiers

PMID23175765
PMCPMC3537446

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.