Evidence map›Paper›PMID 23175669›Full record

ArticleJournal of experimental botany2012

DNA methylation dynamics and MET1a-like gene expression changes during stress-induced pollen reprogramming to embryogenesis.

María-Teresa Solís, María Rodríguez-Serrano, Mónica Meijón, María-Jesús Cañal, Alejandro Cifuentes, María C Risueño, Pilar S Testillano

RetractedAbstract readRetracted Publication
In one paragraph

Article in Journal of experimental botany, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Article
  2. Article
  3. Horticulture research · 2025
    Article
  4. Article
  5. Recent Progress on Plant Apomixis for Genetic Improvement.International journal of molecular sciences · 2024
    Review
  6. Current issues in molecular biology · 2023
    Review
  7. The Roads to Haploid Embryogenesis.Plants (Basel, Switzerland) · 2023
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. A simple flow cytometry-based assay to study global methylation levels in onion, a non-model species.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

María-Teresa SolísPlant Development and Nuclear Architecture lab. Biological Research Center, CIB-CSIC, Madrid, Spain.
María Rodríguez-Serrano
Mónica Meijón
María-Jesús Cañal
Alejandro Cifuentes
María C Risueño
Pilar S Testillano

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stress-induced plant cell reprogramming involves changes in global genome organization, being the epigenetic modifications key factors in the regulation of genome flexibility. DNA methylation, accomplished by DNA methyltransferases, constitutes a prominent epigenetic modification of the chromatin fibre which is locked in a transcriptionally inactive conformation. Changes in DNA methylation accompany the reorganization of the nuclear architecture during plant cell differentiation and proliferation. After a stress treatment, in vitro-cultured microspores are reprogrammed and change their gametophytic developmental pathway towards embryogenesis, the process constituting a useful system of reprogramming in isolated cells for applied and basic research. Gene expression driven by developmental and stress cues often depends on DNA methylation; however, global DNA methylation and genome-wide expression patterns relationship is still poorly understood. In this work, the dynamics of DNA methylation patterns in relation to nuclear architecture and the expression of BnMET1a-like DNA methyltransferase genes have been analysed during pollen development and pollen reprogramming to embryogenesis in Brassica napus L. by a multidisciplinary approach. Results showed an epigenetic reprogramming after microspore embryogenesis induction which involved a decrease of global DNA methylation and its nuclear redistribution with the change of developmental programme and the activation of cell proliferation, while DNA methylation increases with pollen and embryo differentiation in a cell-type-specific manner. Changes in the presence, abundance, and distribution of BnMET1a-like transcripts highly correlated with variations in DNA methylation. Mature zygotic and pollen embryos presented analogous patterns of DNA methylation and MET1a-like expression, providing new evidence of the similarities between both developmental embryogenic programmes.

Indexed as

DNA MethylationGene Expression Regulation, PlantGenes, PlantBrassica napusCell NucleusDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesElectrophoresis, CapillaryGene Expression Regulation, DevelopmentalIn Situ Hybridization, FluorescenceMolecular Sequence DataPollenReverse Transcriptase Polymerase Chain ReactionSequence Homology, Amino AcidStress, PhysiologicalDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-Methyltransferases

Identifiers

PMID23175669
PMCPMC3504494

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.