Evidence map›Paper›PMID 23175649›Full record

ArticleJournal of bacteriology2013

Mutagenesis and modeling to predict structural and functional characteristics of the Staphylococcus aureus MepA multidrug efflux pump.

Bryan D Schindler, Diixa Patel, Susan M Seo, Glenn W Kaatz

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Identification of genetic mutations conferring tedizolid resistance in MRSA mutants.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2025
    Article
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  5. Enhanced Efficacy of Ciprofloxacin and Tobramycin againstAntibiotics (Basel, Switzerland) · 2024
    Article
  6. Article
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  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Mechanisms of drug resistance: quinolone resistance.Annals of the New York Academy of Sciences · 2015
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Bryan D SchindlerJohn D. Dingell Department of Veterans Affairs Medical Center, Detroit, Michigan, USA.
Diixa Patel
Susan M Seo
Glenn W Kaatz
United States Department of Veterans Affairs · USJohn D. Dingell VA Medical Center · USWayne State University · US

Funding

MepRA, A Substrate-Responsive Repressor-MATE MDR Efflux Pump Tandem in S. aureusI01BX000465 · VA · JOHN D DINGELL VA MEDICAL CENTER · PI KAATZ, GLENN WILLIAM · 2011 to 2014
–
BLRD VA I01 BX000465
6 · The paper itself

Abstract

MepA is a multidrug and toxin extrusion (MATE) family protein and the only MATE protein encoded within the Staphylococcus aureus genome. Structural data for MATE proteins are limited to a single high-resolution example, NorM of Vibrio cholerae. Substitution mutations were created in MepA using gradient plates containing both a substrate and reserpine as an efflux pump inhibitor. Site-directed mutagenesis of plasmid-based mepA was used to reproduce these mutations, as well as unique or low-frequency mutations identified in mepA-overexpressing clinical strains, and to mutagenize conserved acidic residues. The effect of these changes on protein function was quantitated in a norA-disrupted host strain by susceptibility testing with and without inhibitors and by determining the proficiency of ethidium efflux. Up-function substitutions clustered in the carboxy half of MepA, near the cytoplasmic face of the protein. Repeated application of the same gradient plate conditions frequently reproduced identical substitution mutations, suggesting that individual residues are required for interaction with specific substrates. Acidic residues critical to protein function were identified in helices 4 and 5. In silico modeling revealed an outward-facing molecule, with helices 1, 2, 4, 7, 8, and 10 having contact with a central cavity that may represent a substrate translocation pathway. Functionally important residues within this cavity included S81, A161, M291, and A302. These data provide a critical starting point for understanding how MATE multidrug efflux proteins function and will be useful in refining crystallographic data when they are available.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnti-Bacterial AgentsCarrier ProteinsComputer SimulationDrug Resistance, Multiple, BacterialGenes, MDRModels, ChemicalModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedPlasmidsProtein ConformationStaphylococcus aureusAnti-Bacterial AgentsCarrier Proteins

Identifiers

PMID23175649
PMCPMC3554018
OpenAlexW2049035285

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.