ArticleNucleic acids research2013
EuPathDB: the eukaryotic pathogen database.
Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
55 citing papers in PubMed.
- Comparative proteomics reveals distinct functions and localization of invasive Entamoeba histolytica and non-invasive Entamoeba moshkovskii proteins.Parasites & vectors · 2026Article
- ASVmaker: A New Tool to Improve Taxonomic Identifications for Amplicon Sequencing Data.Plants (Basel, Switzerland) · 2023Article
- In Silico Survey and Characterization ofPathogens (Basel, Switzerland) · 2021Article
- Activity Comparison of Epigenetic Modulators against the Hemoprotozoan ParasitesACS infectious diseases · 2021Article
- Microbe-set enrichment analysis facilitates functional interpretation of microbiome profiling data.Scientific reports · 2020Article
- The apical annuli of Toxoplasma gondii are composed of coiled-coil and signalling proteins embedded in the inner membrane complex sutures.Cellular microbiology · 2020Article
- Lateral Acquisitions Repeatedly Remodel the Oxygen Detoxification Pathway in Diplomonads and Relatives.Genome biology and evolution · 2019Article
- The tyrosine transporter of Toxoplasma gondii is a member of the newly defined apicomplexan amino acid transporter (ApiAT) family.PLoS pathogens · 2019Article
- Elucidating the mitochondrial proteome ofeLife · 2018Article
- Disbiome database: linking the microbiome to disease.BMC microbiology · 2018Article
- Uncovering the essential genes of the human malaria parasiteScience (New York, N.Y.) · 2018Article
- Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing.Investigative ophthalmology & visual science · 2018Article
- EuPathDB: The Eukaryotic Pathogen Genomics Database Resource.Methods in molecular biology (Clifton, N.J.) · 2018Article
- GT-rich promoters can drive RNA pol II transcription and deposition of H2A.Z in African trypanosomes.The EMBO journal · 2017Article
- Characterisation of sterol biosynthesis and validation of 14α-demethylase as a drug target in Acanthamoeba.Scientific reports · 2017Article
- PopNet: A Markov Clustering Approach to Study Population Genetic Structure.Molecular biology and evolution · 2017Article
- Genomics of apicomplexan parasites.Critical reviews in biochemistry and molecular biology · 2017Review
- Stability and function of a putative microtubule-organizing center in the human parasiteMolecular biology of the cell · 2017Article
- Genetic polymorphisms in Plasmodium falciparum chloroquine resistance genes, pfcrt and pfmdr1, in North Sulawesi, Indonesia.BMC research notes · 2017Article
- Asparagine-Linked Glycans ofMolecular & cellular proteomics : MCP · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
25 authors.
Funding
Abstract
EuPathDB (http://eupathdb.org) resources include 11 databases supporting eukaryotic pathogen genomic and functional genomic data, isolate data and phylogenomics. EuPathDB resources are built using the same infrastructure and provide a sophisticated search strategy system enabling complex interrogations of underlying data. Recent advances in EuPathDB resources include the design and implementation of a new data loading workflow, a new database supporting Piroplasmida (i.e. Babesia and Theileria), the addition of large amounts of new data and data types and the incorporation of new analysis tools. New data include genome sequences and annotation, strand-specific RNA-seq data, splice junction predictions (based on RNA-seq), phosphoproteomic data, high-throughput phenotyping data, single nucleotide polymorphism data based on high-throughput sequencing (HTS) and expression quantitative trait loci data. New analysis tools enable users to search for DNA motifs and define genes based on their genomic colocation, view results from searches graphically (i.e. genes mapped to chromosomes or isolates displayed on a map) and analyze data from columns in result tables (word cloud and histogram summaries of column content). The manuscript herein describes updates to EuPathDB since the previous report published in NAR in 2010.
Indexed as
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.