Evidence map›Paper›PMID 23175605›Full record

ArticleNucleic acids research2013

The EBI enzyme portal.

Rafael Alcántara, Joseph Onwubiko, Hong Cao, Paula de Matos, Jennifer A Cham, Jules Jacobsen, Gemma L Holliday, Julia D Fischer, Syed Asad Rahman, Bijay Jassal and 11 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Enzyme Databases in the Era of Omics and Artificial Intelligence.International journal of molecular sciences · 2023
    Review
  3. Frontiers in pharmacology · 2019
    Review
  4. Article
  5. ProtVista: visualization of protein sequence annotations.Bioinformatics (Oxford, England) · 2017
    Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Rafael AlcántaraEuropean Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK. rafael.alcantara@ebi.ac.uk
Joseph Onwubiko
Hong Cao
Paula de Matos
Jennifer A Cham
Jules Jacobsen
Gemma L Holliday
Julia D Fischer
Syed Asad Rahman
Bijay Jassal
Mikael Goujon
Francis Rowland
Sameer Velankar
Rodrigo López
John P Overington
Gerard J Kleywegt
Henning Hermjakob
Claire O'Donovan
María Jesús Martín
Janet M Thornton
Christoph Steinbeck

Funding

Wellcome Trust 086151
6 · The paper itself

Abstract

The availability of comprehensive information about enzymes plays an important role in answering questions relevant to interdisciplinary fields such as biochemistry, enzymology, biofuels, bioengineering and drug discovery. At the EMBL European Bioinformatics Institute, we have developed an enzyme portal (http://www.ebi.ac.uk/enzymeportal) to provide this wealth of information on enzymes from multiple in-house resources addressing particular data classes: protein sequence and structure, reactions, pathways and small molecules. The fact that these data reside in separate databases makes information discovery cumbersome. The main goal of the portal is to simplify this process for end users.

Indexed as

Databases, ProteinDiseaseEnzymesInternetProtein ConformationUser-Computer InterfaceEnzymes

Identifiers

PMID23175605
PMCPMC3531056

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.