Evidence map›Paper›PMID 23175503›Full record

ArticleMicrobiology (Reading, England)2013

The nucleoid-associated protein HUβ affects global gene expression in Porphyromonas gingivalis.

Richa Priyadarshini, Carla Cugini, Annette Arndt, Tsute Chen, Natalia O Tjokro, Steven D Goodman, Mary E Davey

Abstract read
In one paragraph

Article in Microbiology (Reading, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Transcription regulator TrtA modulates oxygen stress response inApplied and environmental microbiology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Growth ofJournal of oral microbiology · 2023
    Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Genes Contributing toFrontiers in cellular and infection microbiology · 2017
    Article
  17. Review
  18. Synthesis of Sphingolipids Impacts Survival ofFrontiers in microbiology · 2016
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Richa PriyadarshiniDepartment of Oral Medicine Infection and Immunity, Harvard School of Dental Medicine, Boston, MA, USA.
Carla CuginiDepartment of Oral Medicine Infection and Immunity, Harvard School of Dental Medicine, Boston, MA, USA.
Annette ArndtInstitute of Microbiology and Biotechnology, University of Ulm, Ulm, Germany.
Tsute ChenDepartment of Oral Medicine Infection and Immunity, Harvard School of Dental Medicine, Boston, MA, USA.
Natalia O TjokroDivision of Biomedical Sciences, Herman Ostrow School of Dentistry, University of Southern California, Los Angeles, CA, USA.
Steven D GoodmanDivision of Biomedical Sciences, Herman Ostrow School of Dentistry, University of Southern California, Los Angeles, CA, USA.
Mary E DaveyDepartment of Oral Medicine Infection and Immunity, Harvard School of Dental Medicine, Boston, MA, USA.
Harvard University · USUniversity of Southern California · USUniversität Ulm · DE

Funding

Regulatory Mechanisms Controlling Expression of P. gingivalis Surface StructuresR01DE019117 · NIDCR · UNIVERSITY OF FLORIDA · PI DAVEY, MARY ELLEN · 2009 to 2019
$4.5M
NIDCR NIH HHS DE-019117NIDCR NIH HHS R01 DE019117
6 · The paper itself

Abstract

HU is a non-sequence-specific DNA-binding protein and one of the most abundant nucleoid-associated proteins in the bacterial cell. Like Escherichia coli, the genome of Porphyromonas gingivalis is predicted to encode both the HUα (PG1258) and the HUβ (PG0121) subunit. We have previously reported that PG0121 encodes a non-specific DNA-binding protein and that PG0121 is co-transcribed with the K-antigen capsule synthesis operon. We also reported that deletion of PG0121 resulted in downregulation of capsule operon expression and produced a P. gingivalis strain that is phenotypically deficient in surface polysaccharide production. Here, we show through complementation experiments in an E. coli MG1655 hupAB double mutant strain that PG0121 encodes a functional HU homologue. Microarray and quantitative RT-PCR analysis were used to further investigate global transcriptional regulation by HUβ using comparative expression profiling of the PG0121 (HUβ) mutant strain to the parent strain, W83. Our analysis determined that expression of genes encoding proteins involved in a variety of biological functions, including iron acquisition, cell division and translation, as well as a number of predicted nucleoid associated proteins were altered in the PG0121 mutant. Phenotypic and quantitative real-time-PCR (qRT-PCR) analyses determined that under iron-limiting growth conditions, cell division and viability were defective in the PG0121 mutant. Collectively, our studies show that PG0121 does indeed encode a functional HU homologue, and HUβ has global regulatory functions in P. gingivalis; it affects not only production of capsular polysaccharides but also expression of genes involved in basic functions, such as cell wall synthesis, cell division and iron uptake.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsDNA, BacterialDNA-Binding ProteinsEscherichia coliGene DeletionGene Expression ProfilingGenetic Complementation TestMicroarray AnalysisPorphyromonas gingivalisProtein BindingReal-Time Polymerase Chain ReactionBacterial ProteinsDNA, BacterialDNA-Binding Proteinshistone-like protein HU, bacteria

Identifiers

PMID23175503
PMCPMC3709559
OpenAlexW1990189243

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.