Evidence map›Paper›PMID 23173089›Full record

ArticleG3 (Bethesda, Md.)2012

On the role of PDZ domain-encoding genes in Drosophila border cell migration.

George Aranjuez, Elizabeth Kudlaty, Michelle S Longworth, Jocelyn A McDonald

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  4. TheMolecular biology of the cell · 2022
    Article
  5. Fascin regulates protrusions and delamination to mediate invasive, collective cell migration in vivo.Developmental dynamics : an official publication of the American Association of Anatomists · 2020
    Article
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  11. The Journal of cell biology · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

George AranjuezDepartment of Molecular Genetics, Lerner Research Institute, Cleveland Clinic, Cleveland, OH 44195, USA.
Elizabeth Kudlaty
Michelle S Longworth
Jocelyn A McDonald
Case Western Reserve University · USCleveland Clinic Lerner College of Medicine · USNorthwestern University · US

Funding

Clinical and Translational Science Collaborative of ClevelandUL1TR000439 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI KONSTAN, MICHAEL W. · 2012 to 2016
$50.0M
TRAINING IN NORMAL AND ABNORMAL DEVELOPMENTT32HD007104 · NICHD · CASE WESTERN RESERVE UNIVERSITY · PI HARTE, PETER J. · 1985 to 2010
$3.5M
Regulation of in vivo cell migration by the polarity protein Par-1R01GM078526 · NIGMS · CLEVELAND CLINIC LERNER COM-CWRU · PI MCDONALD, JOCELYN A · 2008 to 2012
$1.6M
Condensin-mediated genome organization and transcriptional regulationR01GM102400 · NIGMS · CLEVELAND CLINIC LERNER COM-CWRU · PI LONGWORTH, MICHELLE S · 2012 to 2016
$1.5M
NCATS NIH HHS UL1 TR000439NICHD NIH HHS T32 HD-007104NICHD NIH HHS T32 HD007104NIGMS NIH HHS R01 GM-078526NIGMS NIH HHS R01 GM078526NIGMS NIH HHS R01 GM102400
6 · The paper itself

Abstract

Cells often move as collective groups during normal embryonic development and wound healing, although the mechanisms governing this type of migration are poorly understood. The Drosophila melanogaster border cells migrate as a cluster during late oogenesis and serve as a powerful in vivo genetic model for collective cell migration. To discover new genes that participate in border cell migration, 64 out of 66 genes that encode PDZ domain-containing proteins were systematically targeted by in vivo RNAi knockdown. The PDZ domain is one of the largest families of protein-protein interaction domains found in eukaryotes. Proteins that contain PDZ domains participate in a variety of biological processes, including signal transduction and establishment of epithelial apical-basal polarity. Targeting PDZ proteins effectively assesses a larger number of genes via the protein complexes and pathways through which these proteins function. par-6, a known regulator of border cell migration, was a positive hit and thus validated the approach. Knockdown of 14 PDZ domain genes disrupted migration with multiple RNAi lines. The candidate genes have diverse predicted cellular functions and are anticipated to provide new insights into the mechanisms that control border cell movement. As a test of this concept, two genes that disrupted migration were characterized in more detail: big bang and the Dlg5 homolog CG6509. We present evidence that Big bang regulates JAK/STAT signaling, whereas Dlg5/CG6509 maintains cluster cohesion. Moreover, these results demonstrate that targeting a selected class of genes by RNAi can uncover novel regulators of collective cell migration.

Indexed as

Genes, InsectPDZ DomainsAnimalsCell MovementDrosophilaDrosophila ProteinsGene Expression Regulation, DevelopmentalJanus KinasesRNA, Small InterferingSignal TransductionDrosophila ProteinsJanus KinasesRNA, Small Interferingborder cellscollective migrationDrosophilaJAK/STATPSD95/Dlg/ZO-1 (PDZ) domains

Identifiers

PMID23173089
PMCPMC3484668
OpenAlexW2152225670

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.