Evidence map›Paper›PMID 23173083›Full record

ArticleG3 (Bethesda, Md.)2012

Genetic analysis of vertebral regionalization and number in medaka (Oryzias latipes) inbred lines.

Tetsuaki Kimura, Minori Shinya, Kiyosi Naruse

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. A Baseline for Skeletal Investigations in Medaka (Frontiers in endocrinology · 2022
    Review
  4. Article
  5. Article
  6. Exaggerated heterochiasmy in a fish with sex-linked male coloration polymorphisms.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Article
  8. G3 (Bethesda, Md.) · 2017
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Tetsuaki KimuraLaboratory of Bioresources, National Institute for Basic Biology, Nishigonaka 38, Okazaki, Aichi, Japan. tekimura@nibb.ac.jp
Minori Shinya
Kiyosi Naruse
National Institute for Basic Biology · JPNational Institute of Genetics · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vertebral number is the most variable trait among vertebrates. In addition to the vertebral number, the ratio of abdominal to caudal vertebrae is a variable trait. The vertebral number and the ratio of abdominal to caudal vertebrae contribute to vertebrate diversity. It is very interesting to know how to determine the vertebral number and the ratio of abdominal to caudal vertebrae. In this study, we identify differences in the vertebral number and the ratio of abdominal vertebrae to vertebral number between two inbred lines of medaka, namely, Hd-rRII1 and Kaga. To identify the genetic factor of those differences, we performed quantitative trait locus (QTL) analysis for vertebral number and the ratio of abdominal vertebrae to vertebral number using 200 F(2) fish. Our results show a suggestive QTL of the ratio of abdominal vertebrae to vertebral number on chromosome 15, and five QTL of vertebral number on chromosomes 1, 10, 11, 17, and 23. The QTL on chromosome 15 contains hoxDb cluster genes. The QTL of vertebral number include some genes related to the segmentation clock and axial elongation. In addition, we show that the difference in vertebral number between two inbred lines is derived from differences in the anteroposterior length of somites. Our results emphasize that the developmental process should be considered in genetic analyses for vertebral number.

Indexed as

Quantitative Trait LociAnimalsAnimals, Inbred StrainsChromosomesGenetic LinkageGenetic MarkersHomeodomain ProteinsMultigene FamilyOryziasSpineGenetic MarkersHomeodomain Proteinsabdominal vertebraecaudal vertebraegenome-wide marker setvertebral number

Identifiers

PMID23173083
PMCPMC3484662
OpenAlexW2078472490

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.