Evidence map›Paper›PMID 23172916›Full record

ArticleDevelopment (Cambridge, England)2012

Regulation of retinal interneuron subtype identity by the Iroquois homeobox gene Irx6.

Erin N Star, Minyan Zhu, Zhiwei Shi, Haiquan Liu, Mohammad Pashmforoush, Yves Sauve, Benoit G Bruneau, Robert L Chow

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. TheiScience · 2025
    Article
  3. Technologies, strategies, and cautions when deconvoluting genome-wide association signals: FTO in focus.Obesity reviews : an official journal of the International Association for the Study of Obesity · 2023
    Review
  4. Article
  5. Contraction of axonal and dendritic fields inFrontiers in neuroanatomy · 2022
    Article
  6. Article
  7. Genetic control of retinal ganglion cell genesis.Cellular and molecular life sciences : CMLS · 2021
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Transcription factor PRDM8 is required for rod bipolar and type 2 OFF-cone bipolar cell survival and amacrine subtype identity.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Erin N StarDepartment of Biology, University of Victoria, Victoria, BC V8W 3N5, Canada.
Minyan Zhu
Zhiwei Shi
Haiquan Liu
Mohammad Pashmforoush
Yves Sauve
Benoit G Bruneau
Robert L Chow
University of Victoria · CA

Funding

Iroquois Homeobox Transcription Factors in Heart Development and PhysiologyR01HL093414 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI BRUNEAU, BENOIT GAETAN · 2009 to 2010
$955k
CIHRNHLBI NIH HHS R01 HL093414NHLBI NIH HHS R01 HL93414 ARRA
6 · The paper itself

Abstract

Interneuronal subtype diversity lies at the heart of the distinct molecular properties and synaptic connections that shape the formation of the neuronal circuits that are necessary for the complex spatial and temporal processing of sensory information. Here, we investigate the role of Irx6, a member of the Iroquois homeodomain transcription factor family, in regulating the development of retinal bipolar interneurons. Using a knock-in reporter approach, we show that, in the mouse retina, Irx6 is expressed in type 2 and 3a OFF bipolar interneurons and is required for the expression of cell type-specific markers in these cells, likely through direct transcriptional regulation. In Irx6 mutant mice, presumptive type 3a bipolar cells exhibit an expansion of their axonal projection domain to the entire OFF region of the inner plexiform layer, and adopt molecular features of both type 2 and 3a bipolar cells, highlighted by the ectopic upregulation of neurokinin 3 receptor (Nk3r) and Vsx1. These findings reveal Irx6 as a key regulator of type 3a bipolar cell identity that prevents these cells from adopting characteristic features of type 2 bipolar cells. Analysis of the Irx6;Vsx1 double null retina suggests that the terminal differentiation of type 2 bipolar cells is dependent on the combined expression of the transcription factors Irx6 and Vsx1, but also points to the existence of Irx6;Vsx1-independent mechanisms in regulating OFF bipolar subtype-specific gene expression. This work provides insight into the generation of neuronal subtypes by revealing a mechanism in which opposing, yet interdependent, transcription factors regulate subtype identity.

Indexed as

AnimalsCell DifferentiationGene Expression Regulation, DevelopmentalGenes, ReporterHEK293 CellsHomeodomain ProteinsHumansInterneuronsMiceMice, TransgenicModels, BiologicalNeurogenesisRetinaRetinal Bipolar CellsTranscription FactorsTransfectionHomeodomain ProteinsIrx6 protein, mouseTranscription Factors

Identifiers

PMID23172916
PMCPMC3509726
OpenAlexW2000722876

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.