Evidence map›Paper›PMID 23170981›Full record

ArticleMolecular microbiology2013

'Transient' genetic suppression facilitates generation of hexose transporter null mutants in Leishmania mexicana.

Xiuhong Feng, Dayana Rodriguez-Contreras, Tamsen Polley, Lon-Fye Lye, David Scott, Richard J S Burchmore, Stephen M Beverley, Scott M Landfear

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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  3. Article
  4. Regulation and biological function of a flagellar glucose transporter in Leishmania mexicana: a potential glucose sensor.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2015
    Article
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Xiuhong FengDepartment of Molecular Microbiology & Immunology, Oregon Health & Science University, Portland, OR 97239, USA.
Dayana Rodriguez-Contreras
Tamsen Polley
Lon-Fye Lye
David Scott
Richard J S Burchmore
Stephen M Beverley
Scott M Landfear
Oregon Health & Science University · USWashington University in St. Louis · USWellcome Trust · GB

Funding

MOLECULAR GENETICS OF LEISHMANIA USING DNA TRANSFECTIONR01AI029646 · NIAID · WASHINGTON UNIVERSITY · PI BEVERLEY, STEPHEN M · 1990 to 2015
$9.3M
STAGE-SPECIFIC GENES IN LEISHMANIA ENRIETTIIR01AI025920 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI LANDFEAR, SCOTT M · 1988 to 2010
$3.8M
MECHANISM OF GENE AMPLIFICATION IN LEISHMANIAR01AI021903 · NIAID · WASHINGTON UNIVERSITY · PI BEVERLEY, STEPHEN M · 1985 to 2010
$2.6M
DRUG RESISTANCE AND GENE AMPLIFICATION IN LEISHMANIAR37AI021903 · NIAID · WASHINGTON UNIVERSITY · PI BEVERLEY, STEPHEN M · 1993 to 2002
$960k
NIAID NIH HHS AI21903NIAID NIH HHS AI25920NIAID NIH HHS AI29646NIAID NIH HHS R01 AI021903NIAID NIH HHS R01 AI025920NIAID NIH HHS R01 AI029646NIAID NIH HHS R37 AI021903
6 · The paper itself

Abstract

The genome of Leishmania mexicana encompasses a cluster of three glucose transporter genes designated LmxGT1, LmxGT2 and LmxGT3. Functional and genetic studies of a cluster null mutant (Δlmxgt1-3) have dissected the roles of these proteins in Leishmania metabolism and virulence. However, null mutants were recovered at very low frequency, and comparative genome hybridizations revealed that Δlmxgt1-3 mutants contained a linear extrachromosomal 40 kb amplification of a region on chromosome 29 not amplified in wild type parasites. These data suggested a model where this 29-40k amplicon encoded a second site suppressor contributing to parasite survival in the absence of GT1-3 function. To test this, we quantified the frequency of recovery of knockouts in the presence of individual overexpressed open reading frames covering the 29-40k amplicon. The data mapped the suppressor activity to PIFTC3, encoding a component of the intraflagellar transport pathway. We discuss possible models by which PIFTC3 might act to facilitate loss of GTs specifically. Surprisingly, by plasmid segregation we showed that continued PIFTC3 overexpression was not required for Δlmxgt1-3 viability. These studies provide the first evidence that genetic suppression can occur by providing critical biological functions transiently. This novel form of genetic suppression may extend to other genes, pathways and organisms.

Indexed as

Gene Knockout TechniquesSuppression, GeneticLeishmania mexicanaMicrobial ViabilityModels, BiologicalMonosaccharide Transport ProteinsMonosaccharide Transport Proteins

Identifiers

PMID23170981
PMCPMC3545093
OpenAlexW2130715031

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.