Evidence map›Paper›PMID 23169623›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Relation between anaerobic inactivation and oxygen tolerance in a large series of NiFe hydrogenase mutants.

Abbas Abou Hamdan, Pierre-Pol Liebgott, Vincent Fourmond, Oscar Gutiérrez-Sanz, Antonio L De Lacey, Pascale Infossi, Marc Rousset, Sébastien Dementin, Christophe Léger

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 65 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Abbas Abou HamdanLaboratoire de Bioénergétique et Ingénierie des Protéines, Centre National de la Recherche Scientifique, Aix-Marseille Université, Institut de Microbiologie de la Méditerranée, 13402 Marseille Cedex 20, France.
Pierre-Pol Liebgott
Vincent Fourmond
Oscar Gutiérrez-Sanz
Antonio L De Lacey
Pascale Infossi
Marc Rousset
Sébastien Dementin
Christophe Léger
Aix-Marseille Université · FRBioénergétique et Ingénierie des Protéines · FRInstitut de Microbiologie de la Méditerranée · FRConsejo Superior de Investigaciones Científicas · ESInstitut de Recherche pour le Développement · FRInstituto de Catálisis y Petroleoquímica · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nickel-containing hydrogenases, the biological catalysts of oxidation and production, reversibly inactivate under anaerobic, oxidizing conditions. We aim at understanding the mechanism of (in)activation and what determines its kinetics, because there is a correlation between fast reductive reactivation and oxygen tolerance, a property of some hydrogenases that is very desirable from the point of view of biotechnology. Direct electrochemistry is potentially very useful for learning about the redox-dependent conversions between active and inactive forms of hydrogenase, but the voltammetric signals are complex and often misread. Here we describe simple analytical models that we used to characterize and compare 16 mutants, obtained by substituting the position-74 valine of the -sensitive NiFe hydrogenase from Desulfovibrio fructosovorans. We observed that this substitution can accelerate reactivation up to 1,000-fold, depending on the polarity of the position 74 amino acid side chain. In terms of kinetics of anaerobic (in)activation and oxygen tolerance, the valine-to-histidine mutation has the most spectacular effect: The V74H mutant compares favorably with the -tolerant hydrogenase from Aquifex aeolicus, which we use here as a benchmark.

Indexed as

Models, BiologicalAmino Acid SubstitutionAnaerobiosisBiotechnologyDesulfovibrioEnzyme ActivationHydrogenaseKineticsMutation, MissenseOxidation-ReductionHydrogenasenickel-iron hydrogenase

Identifiers

PMID23169623
PMCPMC3523816
OpenAlexW2080958947

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.