Evidence map›Paper›PMID 23167247›Full record

ArticleJournal of the American Chemical Society2012

Azurin as a protein scaffold for a low-coordinate nonheme iron site with a small-molecule binding pocket.

Matthew P McLaughlin, Marius Retegan, Eckhard Bill, Thomas M Payne, Hannah S Shafaat, Salvador Peña, Jawahar Sudhamsu, Amy A Ensign, Brian R Crane, Frank Neese and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

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  16. A single protein redox ruler.Proceedings of the National Academy of Sciences of the United States of America · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Matthew P McLaughlinDepartment of Chemistry, University of Rochester, Rochester, New York 14618, United States.
Marius Retegan
Eckhard Bill
Thomas M Payne
Hannah S Shafaat
Salvador Peña
Jawahar Sudhamsu
Amy A Ensign
Brian R Crane
Frank Neese
Patrick L Holland
University of Rochester · USCornell University · USMax Planck Institute for Chemical Energy Conversion · DEMax Planck Society · DE

Funding

TRAINING IN MOLECULAR PHYSICS OF BIOLOGICAL SYSTEMST32GM008267 · NIGMS · CORNELL UNIVERSITY ITHACA · PI WANG, MICHELLE D. · 1988 to 2021
$9.6M
Low-Coordinate Synthetic Models for Nitrogenase ActivityR01GM065313 · NIGMS · YALE UNIVERSITY · PI PATRICK L HOLLAND · 2004 to 2026
$6.4M
The University of Rochester's Clinical and Translational Science InstituteTL1RR024135 · NCRR · UNIVERSITY OF ROCHESTER · PI PEARSON, THOMAS ARTHUR · 2006 to 2011
$3.7M
NCRR NIH HHS TL1 RR024135NIGMS NIH HHS GM-065313NIGMS NIH HHS R01 GM065313NIGMS NIH HHS T32 GM008267NIGMS NIH HHS TM-GM-008267
6 · The paper itself

Abstract

The apoprotein of Pseudomonas aeruginosa azurin binds iron(II) to give a 1:1 complex, which has been characterized by electronic absorption, Mössbauer, and NMR spectroscopies, as well as X-ray crystallography and quantum-chemical computations. Despite potential competition by water and other coordinating residues, iron(II) binds tightly to the low-coordinate site. The iron(II) complex does not react with chemical redox agents to undergo oxidation or reduction. Spectroscopically calibrated quantum-chemical computations show that the complex has high-spin iron(II) in a pseudotetrahedral coordination environment, which features interactions with side chains of two histidines and a cysteine as well as the C═O of Gly45. In the (5)A(1) ground state, the d(z(2)) orbital is doubly occupied. Mutation of Met121 to Ala leaves the metal site in a similar environment but creates a pocket for reversible binding of small anions to the iron(II) center. Specifically, azide forms a high-spin iron(II) complex and cyanide forms a low-spin iron(II) complex.

Indexed as

Quantum TheoryAzidesAzurinBinding SitesCoordination ComplexesCrystallography, X-RayCyanidesIronMagnetic Resonance SpectroscopyMolecular StructureNonheme Iron ProteinsOxidation-ReductionAzidesAzurinCoordination ComplexesCyanidesIronNonheme Iron Proteins

Identifiers

PMID23167247
PMCPMC3515693
OpenAlexW2016080320

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.