Evidence map›Paper›PMID 23166515›Full record

ArticlePLoS genetics2012

HP1a recruitment to promoters is independent of H3K9 methylation in Drosophila melanogaster.

Margarida L A Figueiredo, Philge Philip, Per Stenberg, Jan Larsson

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
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  5. SetDB1 and Su(var)3-9 are essential for late stages of larval development of Drosophila melanogaster.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2023
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  6. Live analysis of position-effect variegation inProceedings of the National Academy of Sciences of the United States of America · 2022
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  9. The Paramount Role ofInsects · 2021
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  14. Genetics · 2019
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  16. Article
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  18. Article
  19. TheGenetics · 2018
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Margarida L A FigueiredoDepartment of Molecular Biology, Umeå University, Umeå, Sweden.
Philge Philip
Per Stenberg
Jan Larsson
Umeå University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heterochromatin protein 1 (HP1) proteins, recognized readers of the heterochromatin mark methylation of histone H3 lysine 9 (H3K9me), are important regulators of heterochromatin-mediated gene silencing and chromosome structure. In Drosophila melanogaster three histone lysine methyl transferases (HKMTs) are associated with the methylation of H3K9: Su(var)3-9, Setdb1, and G9a. To probe the dependence of HP1a binding on H3K9me, its dependence on these three HKMTs, and the division of labor between the HKMTs, we have examined correlations between HP1a binding and H3K9me patterns in wild type and null mutants of these HKMTs. We show here that Su(var)3-9 controls H3K9me-dependent binding of HP1a in pericentromeric regions, while Setdb1 controls it in cytological region 2L:31 and (together with POF) in chromosome 4. HP1a binds to the promoters and within bodies of active genes in these three regions. More importantly, however, HP1a binding at promoters of active genes is independent of H3K9me and POF. Rather, it is associated with heterochromatin protein 2 (HP2) and open chromatin. Our results support a hypothesis in which HP1a nucleates with high affinity independently of H3K9me in promoters of active genes and then spreads via H3K9 methylation and transient looping contacts with those H3K9me target sites.

Indexed as

Chromosomal Proteins, Non-HistoneChromosomesDrosophila melanogasterHistone DemethylasesAnimalsChromatinChromobox Protein Homolog 5Drosophila ProteinsGene SilencingHeterochromatinHistone-Lysine N-MethyltransferaseHistonesMethylationMethyltransferasesPromoter Regions, GeneticChromatinChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDrosophila Proteinsegg protein, DrosophilaHeterochromatinHistone DemethylasesHistone-Lysine N-MethyltransferaseHistonesMethyltransferasesSU(VAR)3-9

Identifiers

PMID23166515
PMCPMC3499360
OpenAlexW2103551151

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.