Evidence map›Paper›PMID 23166334›Full record

ArticlePediatrics2012

Single ABCA3 mutations increase risk for neonatal respiratory distress syndrome.

Jennifer A Wambach, Daniel J Wegner, Kelcey Depass, Hillary Heins, Todd E Druley, Robi D Mitra, Ping An, Qunyuan Zhang, Lawrence M Nogee, F Sessions Cole and 1 more

2 registry-linked trialsAbstract read
In one paragraph

Article in Pediatrics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00014859 completednot on this map

Epidemiology of Surfactant Protein-B Deficiency

Typeobservational_patient_registrySponsorWashington University School of MedicineRan2001 to 2024Enrolled5,176ConditionsLung Diseases, Respiratory Distress Syndrome, Newborn, Pulmonary Surfactant, Lung Diseases, Interstitial
NCT00828243 completednot on this map

Genetic Regulation of Surfactant Deficiency in Human Newborn Infants

TypeobservationalSponsorWashington University School of MedicineRan2007 to 2013Enrolled525ConditionsRespiratory Distress Syndrome, NewbornArmsNutrient
3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 107 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Biomedicines · 2024
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. A dominant negative variant ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Accurate assignment of disease liability to genetic variants using only population data.Genetics in medicine : official journal of the American College of Medical Genetics · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Jennifer A WambachDivision of Newborn Medicine, The Edward Mallinckrodt Department of Pediatrics, Washington University School of Medicine, St Louis, MO 63110. wambach_j@kids.wustl.edu
Daniel J Wegner
Kelcey Depass
Hillary Heins
Todd E Druley
Robi D Mitra
Ping An
Qunyuan Zhang
Lawrence M Nogee
F Sessions Cole
Aaron Hamvas
Center for Systems Biology · USJohns Hopkins Medicine · USMallinckrodt (Ireland) · IE

Funding

Comprehensive Sequencing and Analysis of Variation in NHLBI CohortsUC2HL102925 · NHLBI · BROAD INSTITUTE, INC. · PI ALTSHULER, DAVID, GABRIEL, STACEY · 2010 to 2010
$14.7M
Northwest Genomics CenterUC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2010 to 2010
$14.0M
Northwest Genomics CenterRC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2009 to 2009
$11.0M
Comprehensive Sequencing and Analysis of Variation in NHLBI CohortsRC2HL102925 · NHLBI · BROAD INSTITUTE, INC. · PI ALTSHULER, DAVID, GABRIEL, STACEY · 2009 to 2009
$10.2M
EPIDEMIOLOGY OF SURFACTANT PROTEIN-B DEFICIENCYR01HL065174 · NHLBI · WASHINGTON UNIVERSITY · PI COLE, FRANCIS SESSIONS · 2001 to 2013
$9.3M
Genetic Regulation of Surfactant DeficiencyR01HL082747 · NHLBI · WASHINGTON UNIVERSITY · PI COLE, FRANCIS SESSIONS · 2007 to 2011
$3.5M
ARRA - NHLBI Lung Cohorts Sequencing ProjectRC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2009 to 2009
$2.6M
ARRA - NHLBI Lung Cohorts Sequencing ProjectUC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2010 to 2010
$2.6M
Surfactant protein gene mutations in lung diseaseR01HL054703 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI NOGEE, LAWRENCE M · 2001 to 2011
$2.4M
WHI Sequencing Project (WHISP)UC2HL102924 · NHLBI · OHIO STATE UNIVERSITY · PI CARLSON, CHRISTOPHER S, JACKSON, REBECCA D · 2010 to 2010
$2.4M
WHI Sequencing Project (WHISP)RC2HL102924 · NHLBI · OHIO STATE UNIVERSITY · PI CARLSON, CHRISTOPHER S, JACKSON, REBECCA D · 2009 to 2009
$2.1M
Genetic Basis of Inflammatory Airway DiseaseK12HL089968 · NHLBI · WASHINGTON UNIVERSITY · PI COLE, FRANCIS SESSIONS · 2007 to 2012
$1.6M
NCI NIH HHS K08 CA140720NCI NIH HHS K08 CA140720-01A1NHLBI NIH HHS K08 HL105891NHLBI NIH HHS K12 HL089968NHLBI NIH HHS R01 HL054703NHLBI NIH HHS R01 HL065174NHLBI NIH HHS R01 HL082747NHLBI NIH HHS RC2 HL102923NHLBI NIH HHS RC2 HL102924NHLBI NIH HHS RC2 HL102925NHLBI NIH HHS RC2 HL102926NHLBI NIH HHS RC2 HL103010NHLBI NIH HHS UC2 HL102923NHLBI NIH HHS UC2 HL102924NHLBI NIH HHS UC2 HL102925NHLBI NIH HHS UC2 HL102926NHLBI NIH HHS UC2 HL103010
6 · The paper itself

Abstract

BACKGROUND AND

objectiveNeonatal respiratory distress syndrome (RDS) due to pulmonary surfactant deficiency is heritable, but common variants do not fully explain disease heritability.

methodsUsing next-generation, pooled sequencing of race-stratified DNA samples from infants ≥34 weeks' gestation with and without RDS (n = 513) and from a Missouri population-based cohort (n = 1066), we scanned all exons of 5 surfactant-associated genes and used in silico algorithms to identify functional mutations. We validated each mutation with an independent genotyping platform and compared race-stratified, collapsed frequencies of rare mutations by gene to investigate disease associations and estimate attributable risk.

resultsSingle ABCA3 mutations were overrepresented among European-descent RDS infants (14.3% of RDS vs 3.7% of non-RDS; P = .002) but were not statistically overrepresented among African-descent RDS infants (4.5% of RDS vs 1.5% of non-RDS; P = .23). In the Missouri population-based cohort, 3.6% of European-descent and 1.5% of African-descent infants carried a single ABCA3 mutation. We found no mutations among the RDS infants and no evidence of contribution to population-based disease burden for SFTPC, CHPT1, LPCAT1, or PCYT1B.

conclusionsIn contrast to lethal neonatal RDS resulting from homozygous or compound heterozygous ABCA3 mutations, single ABCA3 mutations are overrepresented among European-descent infants ≥34 weeks' gestation with RDS and account for ~10.9% of the attributable risk among term and late preterm infants. Although ABCA3 mutations are individually rare, they are collectively common among European- and African-descent individuals in the general population.

Indexed as

Mutation1-Acylglycerophosphocholine O-AcyltransferaseATP-Binding Cassette TransportersBlack or African AmericanCholine-Phosphate CytidylyltransferaseCohort StudiesDiacylglycerol CholinephosphotransferaseExomeGene Expression RegulationGenetic Association StudiesGenetic Predisposition to DiseaseGestational AgeHeterozygoteHomozygoteHumansInfant, Newborn1-Acylglycerophosphocholine O-AcyltransferaseABCA3 protein, humanATP-Binding Cassette TransportersCholine-Phosphate CytidylyltransferaseDiacylglycerol CholinephosphotransferaseLpcat1 protein, humanPCYT1B protein, humanPulmonary Surfactant-Associated Protein CSFTPC protein, human

Identifiers

PMID23166334
PMCPMC3507255
OpenAlexW2155501613

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.