Evidence map›Paper›PMID 23166018›Full record

ArticleGenes & development2012

Generating extracellular amyloid aggregates using E. coli cells.

Viknesh Sivanathan, Ann Hochschild

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. OmpC and OmpF Outer Membrane Proteins ofInternational journal of molecular sciences · 2023
    Article
  3. Article
  4. Review
  5. Human RAD51 Protein Forms Amyloid-like AggregatesInternational journal of molecular sciences · 2022
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. A bacterial global regulator forms a prion.Science (New York, N.Y.) · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Viknesh SivanathanDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115 USA.
Ann Hochschild
Harvard University · US

Funding

Treatments for Nipah Virus InfectionU54AI057159 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI CUNNINGHAM, JAMES · 2003 to 2013
$113.7M
A new genetic approach for studying prions and other pathogenic protein aggregateDP1OD003806 · OD · HARVARD MEDICAL SCHOOL · PI HOCHSCHILD, ANN · 2008 to 2011
$3.4M
A new genetic approach for studying prions and other pathogenic protein aggregateDP1AI104284 · NIAID · HARVARD MEDICAL SCHOOL · PI HOCHSCHILD, ANN · 2012 to 2012
$839k
NIAID NIH HHS DP1 AI104284NIAID NIH HHS DP1AI104284NIAID NIH HHS U54 AI057159NIAID NIH HHS U54AI057159NIH HHS DP1 OD003806
6 · The paper itself

Abstract

Diverse proteins are known to be capable of forming amyloid aggregates, self-seeding fibrillar assemblies that may be biologically functional or pathological. Well-known examples include neurodegenerative disease-associated proteins that misfold as amyloid, fungal prion proteins that can transition to a self-propagating amyloid form and certain bacterial proteins that fold as amyloid at the cell surface and promote biofilm formation. To further explore the diversity of amyloidogenic proteins, generally applicable methods for identifying them are critical. Here we describe a cell-based method for generating amyloid aggregates that relies on the natural ability of Escherichia coli cells to elaborate amyloid fibrils at the cell surface. We use several different yeast prion proteins and the human huntingtin protein to show that protein secretion via this specialized export pathway promotes acquisition of the amyloid fold specifically for proteins that have an inherent amyloid-forming propensity. Furthermore, our findings establish the potential of this E. coli-based system to facilitate the implementation of high-throughput screens for identifying amyloidogenic proteins and modulators of amyloid aggregation.

Indexed as

Amyloidogenic ProteinsBacterial ProteinsEscherichia coliHumansHuntingtin ProteinMolecular BiologyNerve Tissue ProteinsPeptide Termination FactorsPrionsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAmyloidogenic ProteinsBacterial ProteinsCrl protein, BacteriaHTT protein, humanHuntingtin ProteinNerve Tissue ProteinsPeptide Termination FactorsPrionsSaccharomyces cerevisiae ProteinsSUP35 protein, S cerevisiae

Identifiers

PMID23166018
PMCPMC3521629
OpenAlexW2118387637

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.