Evidence map›Paper›PMID 23165690›Full record

ArticleAmerican journal of primatology2013

Single-nucleotide polymorphisms reveal patterns of allele sharing across the species boundary between rhesus (Macaca mulatta) and cynomolgus (M. fascicularis) macaques.

Jessica A Satkoski Trask, Wendy T Garnica, David Glenn Smith, Paul Houghton, Nicholas Lerche, Sree Kanthaswamy

Abstract read
In one paragraph

Article in American journal of primatology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  6. Review
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  8. DNA-based Determination of Ancestry in Cynomolgus Macaques (Journal of the American Association for Laboratory Animal Science : JAALAS · 2018
    Article
  9. Article
  10. Normocyte-binding protein required for human erythrocyte invasion by the zoonotic malaria parasite Plasmodium knowlesi.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
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  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jessica A Satkoski TraskDepartment of Anthropology, University of California, Davis, USA. jasatkoski@ucdavis.edu
Wendy T Garnica
David Glenn Smith
Paul Houghton
Nicholas Lerche
Sree Kanthaswamy
University of California, Davis · USSouthwest Florida Research · US

Funding

National Institute on Aging (NIA) ColonyP51OD011107 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Simon J. Atkinson · 2012 to 2026
$191.5M
GENETICALLY DEFINED HERPES/RETROVIRUS SPF MACAQUES: AIDS: VACCINE DVMTU24RR018144 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI LERCHE, NICHOLAS WILLIAM · 2002 to 2011
$15.7M
GENETIC MANAGEMENT OF MECAQUES BY DNA RFLP ANALYSISR24RR005090 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI SMITH, DAVID GLENN · 1988 to 2011
$3.7M
Development, Management and Use of a SNP Map for Rhesus MacaqueR24RR025871 · NCRR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SMITH, DAVID GLENN · 2009 to 2011
$1.6M
NCRR NIH HHS R24 RR005090NCRR NIH HHS R24 RR025871NCRR NIH HHS RR018144-07NCRR NIH HHS RR025871-03NCRR NIH HHS RR05090-20NCRR NIH HHS U24 RR018144NIH HHS P51 OD011107
6 · The paper itself

Abstract

Both phenotypic and genetic evidence for asymmetric hybridization between rhesus (Macaca mulatta) and cynomolgus (Macaca fascicularis) macaques has been observed in the region of Indochina where both species are sympatric. The large-scale sharing of major histocompatibility complex (MHC) class II alleles between the two species in this region supports the hypothesis that genes, and especially genes involved in immune response, are being transferred across the species boundary. This differential introgression has important implications for the incorporation of cynomolgus macaques of unknown geographic origin in biomedical research protocols. Our study found that for 2,808 single-nucleotide polymorphism (SNP) markers, the minor allele frequencies (MAF) and observed heterozygosity calculated from a sample of Vietnamese cynomolgus macaques was significantly different from those calculated from samples of both Chinese rhesus and Indonesian cynomolgus macaques. SNP alleles from Chinese rhesus macaques were overrepresented in a sample of Vietnamese cynomolgus macaques relative to their Indonesian conspecifics and located in genes functionally related to the primary immune system. These results suggest that Indochinese cynomolgus macaques represent a genetically and immunologically distinct entity from Indonesian cynomolgus macaques.

Indexed as

GenotypePolymorphism, Single NucleotideAnimalsChinaDNAGene FrequencyGenetic MarkersGenome-Wide Association StudyGenotyping TechniquesHistocompatibility Antigens Class IIIndonesiaMacaca fascicularisMacaca mulattaVietnamDNAGenetic MarkersHistocompatibility Antigens Class II

Identifiers

PMID23165690
PMCPMC3527661
OpenAlexW2156256114

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.