ArticleFrontiers in plant science2012
Co-expression and co-responses: within and beyond transcription.
Article in Frontiers in plant science, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
19 citing papers in PubMed.
- Cell type heterogeneity in gene co-expression networks: implications for toxicological research.Briefings in bioinformatics · 2025Review
- The hologenome of Daphnia magna reveals possible DNA methylation and microbiome-mediated evolution of the host genome.Nucleic acids research · 2023Article
- Review
- Co-Regulation of Clustered and Neo-Functionalized Genes in Plant-Specialized Metabolism.Plants (Basel, Switzerland) · 2020Review
- The evolution of metabolism: How to test evolutionary hypotheses at the genomic level.Computational and structural biotechnology journal · 2020Review
- Expansion of a core regulon by transposable elements promotes Arabidopsis chemical diversity and pathogen defense.Nature communications · 2019Article
- Hierarchical and Dynamic Regulation of Defense-Responsive Specialized Metabolism by WRKY and MYB Transcription Factors.Frontiers in plant science · 2019Article
- Plant genome and transcriptome annotations: from misconceptions to simple solutions.Briefings in bioinformatics · 2018Article
- The Plastid and Mitochondrial Peptidase Network inThe Plant cell · 2017Review
- A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants.The Plant cell · 2017Article
- Diurnal Transcriptome and Gene Network Represented through Sparse Modeling inFrontiers in plant science · 2017Article
- Metabolomics for Plant Improvement: Status and Prospects.Frontiers in plant science · 2017Review
- A gene expression microarray for Nicotiana benthamiana based on de novo transcriptome sequence assembly.Plant methods · 2016Article
- Review
- Lignin, mitochondrial family, and photorespiratory transporter classification as case studies in using co-expression, co-response, and protein locations to aid in identifying transport functions.Frontiers in plant science · 2014Review
- Arabidopsis ERG28 tethers the sterol C4-demethylation complex to prevent accumulation of a biosynthetic intermediate that interferes with polar auxin transport.The Plant cell · 2013Article
- Catalyzing plant science research with RNA-seq.Frontiers in plant science · 2013Article
- A contribution to the study of plant development evolution based on gene co-expression networks.Frontiers in plant science · 2013Article
- The plant transcriptome-from integrating observations to models.Frontiers in plant science · 2013Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Whole genome sequencing, the relative ease of transcript profiling by the use of microarrays and latterly RNA sequencing approaches have facilitated the capture of vast amounts of transcript data. However, despite the enormous progress made in gene annotation a substantial proportion of genes remain to be annotated at the functional level. Considerable progress has, however, been made by searching for transcriptional coordination between genes of known function and non-annotated genes on the premise that such co-expressed genes tend to be functionally related. Here we review progress made following this approach as well as its expansion to include phenotypic information from other levels of cellular organization such as proteomic and metabolomic data as well as physiological and developmental phenotypes.
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Registered trials
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