Evidence map›Paper›PMID 23161907›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Structural features underlying T-cell receptor sensitivity to concealed MHC class I micropolymorphisms.

Guillaume B Stewart-Jones, Peter Simpson, P Anton van der Merwe, Philippa Easterbrook, Andrew J McMichael, Sarah L Rowland-Jones, E Yvonne Jones, Geraldine M Gillespie

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 30 citations in OpenAlex.

  1. Structural basis for T-cell receptor recognition of p53Acta crystallographica. Section D, Structural biology · 2026
    Article
  2. Article
  3. HLA micropolymorphisms confine neoantigen conformational adaptability and guide T cell receptor selectivity.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
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  12. TCR Recognition of Peptide-MHC-I: Rule Makers and Breakers.International journal of molecular sciences · 2020
    Review
  13. Article
  14. The molecular basis of how buried human leukocyte antigen polymorphism modulates natural killer cell function.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Article
  16. Review
  17. Article
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  20. How structural adaptability exists alongside HLA-A2 bias in the human αβ TCR repertoire.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Guillaume B Stewart-JonesMedical Research Council Human Immunology Unit, Weatherall Institute of Molecular Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DS, United Kingdom.
Peter Simpson
P Anton van der Merwe
Philippa Easterbrook
Andrew J McMichael
Sarah L Rowland-Jones
E Yvonne Jones
Geraldine M Gillespie
University of Oxford · GBMedical Research Council · GBCentre for Human Genetics · GBKing's College London · GBMRC Human Immunology Unit · GB

Funding

Medical Research Council G0501011Medical Research Council G19/31Medical Research Council G9722488Medical Research Council G9900061Medical Research Council MR/J002011/1Wellcome Trust 090532
6 · The paper itself

Abstract

Polymorphic differences distinguishing MHC class I subtypes often permit the presentation of shared epitopes in conformationally identical formats but can affect T-cell repertoire selection, differentially impacting autoimmune susceptibilities and viral clearance in vivo. The molecular mechanisms underlying this effect are not well understood. We performed structural, thermodynamic, and functional analyses of a conserved T-cell receptor (TCR) which is frequently expanded in response to a HIV-1 epitope when presented by HLA-B*5701 but is not selected by HLA-B*5703, which differs from HLA-B*5701 by two concealed polymorphisms. Our findings illustrate that although both HLA-B*57 subtypes display the epitope in structurally conserved formats, the impact of their polymorphic differences occurs directly as a consequence of TCR ligation, primarily because of peptide adjustments required for TCR binding, which involves the interplay of polymorphic residues and water molecules. These minor differences culminate in subtype-specific differential TCR-binding kinetics and cellular function. Our data demonstrate a potential mechanism whereby the most subtle MHC class I micropolymorphisms can influence TCR use and highlight their implications for disease outcomes.

Indexed as

Genes, MHC Class IPolymorphism, GeneticAmino Acid SequenceAntigen-Presenting CellsCrystallography, X-RayEpitopes, T-LymphocyteHIV-1HLA-B AntigensHumansModels, MolecularMolecular Sequence DataProtein ConformationReceptors, Antigen, T-CellThermodynamicsT-LymphocytesEpitopes, T-LymphocyteHLA-B*57:01 antigenHLA-B57 antigenHLA-B AntigensReceptors, Antigen, T-Cell

Identifiers

PMID23161907
PMCPMC3528510
OpenAlexW2067979613

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.