Evidence map›Paper›PMID 23161692›Full record

ArticleNucleic acids research2013

SchistoDB: an updated genome resource for the three key schistosomes of humans.

Adhemar Zerlotini, Eric R G R Aguiar, Fudong Yu, Huayong Xu, Yixue Li, Neil D Young, Robin B Gasser, Anna V Protasio, Matthew Berriman, David S Roos and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Schistosome infection and its effect on pulmonary circulation.Global cardiology science & practice · 2019
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. New research tools for urogenital schistosomiasis.The Journal of infectious diseases · 2015
    Review
  18. Article
  19. Human schistosomiasis.Lancet (London, England) · 2014
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 4 countries.

Adhemar ZerlotiniCentro de Excelência em Bioinformática, National Institute for Science and Technology in Tropical Diseases FIOCRUZ-Minas, Belo Horizonte, MG 30190-002, Brazil.
Eric R G R Aguiar
Fudong Yu
Huayong Xu
Yixue Li
Neil D Young
Robin B Gasser
Anna V Protasio
Matthew Berriman
David S Roos
Jessica C Kissinger
Guilherme Oliveira
Centro de Excelência em Bioinformática · BRShanghai Jiao Tong University · CNUniversity of Georgia · USWellcome Sanger Institute · GB

Funding

INFORMATICS TRAINING FOR BRAZILIAN VECTOR AND PARASITIC DISEASED43TW007012 · FIC · UNIVERSITY OF GEORGIA (UGA) · PI KISSINGER, JESSICA C · 2004 to 2013
$1.9M
FIC NIH HHS TW007012-03Wellcome Trust
6 · The paper itself

Abstract

The new release of SchistoDB (http://SchistoDB.net) provides a rich resource of genomic data for key blood flukes (genus Schistosoma) which cause disease in hundreds of millions of people worldwide. SchistoDB integrates whole-genome sequence and annotation of three species of the genus and provides enhanced bioinformatics analyses and data-mining tools. A simple, yet comprehensive web interface provided through the Strategies Web Development Kit is available for the mining and visualization of the data. Genomic scale data can be queried based on BLAST searches, annotation keywords and gene ID searches, gene ontology terms, sequence motifs, protein characteristics and phylogenetic relationships. Search strategies can be saved within a user's profile for future retrieval and may also be shared with other researchers using a unique web address.

Indexed as

Databases, GeneticGenome, HelminthAnimalsGenomicsInternetSchistosoma haematobiumSchistosoma japonicumSchistosoma mansoni

Identifiers

PMID23161692
PMCPMC3531198
OpenAlexW2141469080

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.