Evidence map›Paper›PMID 23161666›Full record

ArticleElectrophoresis2012

Microwave and magnetic (M(2) ) proteomics of the experimental autoimmune encephalomyelitis animal model of multiple sclerosis.

Itay Raphael, Swetha Mahesula, Karan Kalsaria, Venkat Kotagiri, Anjali B Purkar, Manjushree Anjanappa, Darshit Shah, Vidya Pericherla, Yeshwant Lal Avinash Jadhav, Rekha Raghunathan and 7 more

Erratum issuedAbstract read
In one paragraph

Article in Electrophoresis, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Proteomics in Multiple Sclerosis: The Perspective of the Clinician.International journal of molecular sciences · 2022
    Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Microwave & Magnetic (MTranslational proteomics · 2014
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

17 authors.

Itay RaphaelDepartment of Biology, University of Texas at San Antonio, San Antonio, TX, USA.
Swetha Mahesula
Karan Kalsaria
Venkat Kotagiri
Anjali B Purkar
Manjushree Anjanappa
Darshit Shah
Vidya Pericherla
Yeshwant Lal Avinash Jadhav
Rekha Raghunathan
Michael Vaynberg
David Noriega
Nazul H Grimaldo
Carola Wenk
Jonathan A L Gelfond
Thomas G Forsthuber
William E Haskins

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
STEERING COMMITTEEU54MD008149 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI OFILI, ELIZABETH O. · 2012 to 2018
$21.1M
THE NUTRIGENOMICS OF VITAMIN D METABOLISM IN AFRICAN-AMERICANSU54RR022762 · NCRR · CHARLES R. DREW UNIVERSITY OF MED & SCI · PI NORRIS, KEITH C · 2007 to 2011
$19.6M
STRUCTURAL VISUALIZATION IN BIOINFORMATICSG12RR013646 · NCRR · UNIVERSITY OF TEXAS SAN ANTONIO · PI JOSE-YACAMAN, MIGUEL · 1998 to 2011
$19.6M
RCMI Center for Interdiscplinary Health Research CIHRG12MD007591 · NIMHD · UNIVERSITY OF TEXAS SAN ANTONIO · PI PERRY, GEORGE · 2012 to 2016
$10.4M
Bayesian Approaches to Model Selection for Survival DataR01GM070335 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI IBRAHIM, JOSEPH G · 2003 to 2019
$4.0M
Steroid resistance: Experimental Autoimmune Encephalomyelitis/Multiple SclerosisR01NS052177 · NINDS · UNIVERSITY OF TEXAS SAN ANTONIO · PI FORSTHUBER, THOMAS G. · 2007 to 2010
$1.2M
NCI NIH HHS P30 CA054174NCI NIH HHS P30CA054174NCRR NIH HHS 5G12RR013646-12NCRR NIH HHS 5U54RR022762-05NCRR NIH HHS G12 RR013646NCRR NIH HHS U54 RR022762NIGMS NIH HHS R01 GM070335NIMHD NIH HHS G12 MD007591NIMHD NIH HHS U54 MD008149NINDS NIH HHS NS52177NINDS NIH HHS R01 NS052177
6 · The paper itself

Abstract

We hypothesized that quantitative MS/MS-based proteomics at multiple time points, incorporating rapid microwave and magnetic (M(2) ) sample preparation, could enable relative protein expression to be correlated to disease progression in the experimental autoimmune encephalomyelitis (EAE) animal model of multiple sclerosis. To test our hypothesis, microwave-assisted reduction/alkylation/digestion of proteins from brain tissue lysates bound to C8 magnetic beads and microwave-assisted isobaric chemical labeling were performed of released peptides, in 90 s prior to unbiased proteomic analysis. Disease progression in EAE was assessed by scoring clinical EAE disease severity and confirmed by histopathologic evaluation for central nervous system inflammation. Decoding the expression of 283 top-ranked proteins (p <0.05) at each time point relative to their expression at the peak of disease, from a total of 1191 proteins observed in four technical replicates, revealed a strong statistical correlation to EAE disease score, particularly for the following four proteins that closely mirror disease progression: 14-3-3ε (p = 3.4E-6); GPI (p = 2.1E-5); PLP1 (p = 8.0E-4); PRX1 (p = 1.7E-4). These results were confirmed by Western blotting, signaling pathway analysis, and hierarchical clustering of EAE risk groups. While validation in a larger cohort is underway, we conclude that M(2) proteomics is a rapid method to quantify putative prognostic/predictive protein biomarkers and therapeutic targets of disease progression in the EAE animal model of multiple sclerosis.

Indexed as

AnimalsBlotting, WesternBrainBrain ChemistryCluster AnalysisDisease Models, AnimalEncephalomyelitis, Autoimmune, ExperimentalFemaleMagneticsMiceMice, Inbred C57BLMicrowavesMultiple SclerosisProteomeProteomicsTandem Mass SpectrometryProteome

Identifiers

PMID23161666
PMCPMC3703760

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.