Evidence map›Paper›PMID 23161379›Full record

ArticleElectrophoresis2012

Progress toward the application of molecular force spectroscopy to DNA sequencing.

Peng Cheng, Piercen M Oliver, Michael J Barrett, Dmitri Vezenov

Abstract read
In one paragraph

Article in Electrophoresis, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. The evolution of nanopore sequencing.Frontiers in genetics · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Peng ChengDepartment of Chemistry, Lehigh University, Bethlehem, PA 18015, USA.
Piercen M Oliver
Michael J Barrett
Dmitri Vezenov

Funding

Force spectroscopy platform for label free genome sequencingR21HG004141 · NHGRI · LEHIGH UNIVERSITY · PI VEZENOV, DMITRI · 2006 to 2010
$964k
NHGRI NIH HHS HG004141NHGRI NIH HHS R21 HG004141
6 · The paper itself

Abstract

Many recent advances in DNA sequencing have taken advantage of single-molecule techniques using fluorescently labeled oligonucleotides as the principal mode of detection. However, in spite of the successes of fluorescent-based sequencers, avoidance of labeled nucleotides could substantially reduce the costs of sequencing. This article discusses the development of an alternative sequencing method in which unlabeled DNA can be manipulated directly on a massively parallel scale using single-molecule force spectroscopy. We combine a wide-field optical detection technique (evanescent field excitation) with one of two methods of applying force in parallel, magnetic or dielectrophoretic tweezers, to attain near single-base sensitivity in the double-stranded character of DNA. This article will discuss the developments of such a single-molecule force spectroscopy technique as a potential technology for genome sequencing.

Indexed as

DNADNA, Single-StrandedElectrophoresis, CapillaryOligodeoxyribonucleotidesOptical TweezersSequence Analysis, DNASpectrum AnalysisSurface PropertiesDNADNA, Single-StrandedOligodeoxyribonucleotides

Identifiers

PMID23161379
PMCPMC3815542

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.