Evidence map›Paper›PMID 23160955›Full record

ArticleScience (New York, N.Y.)2012

Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.

Brian J O'Roak, Laura Vives, Wenqing Fu, Jarrett D Egertson, Ian B Stanaway, Ian G Phelps, Gemma Carvill, Akash Kumar, Choli Lee, Katy Ankenman and 16 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 749 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
749citing papers in PubMed, 1 pooled it
69.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

749 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,283 citations in OpenAlex.

  1. Pooled it
  2. Article
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  6. Article
  7. Article
  8. Article
  9. Genetic alterations in SUPT6H are associated with neurodevelopmental disorders.Biochimica et biophysica acta. Molecular basis of disease · 2026
    Article
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  15. A scalable approach to resolving variants of uncertain significance.bioRxiv : the preprint server for biology · 2026
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

689 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 2 institutions in 1 country.

Brian J O'RoakDepartment of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA.
Laura Vives
Wenqing Fu
Jarrett D Egertson
Ian B Stanaway
Ian G Phelps
Gemma Carvill
Akash Kumar
Choli Lee
Katy Ankenman
Jeff Munson
Joseph B Hiatt
Emily H Turner
Roie Levy
Diana R O'Day
Niklas Krumm
Bradley P Coe
Beth K Martin
Elhanan Borenstein
Deborah A Nickerson
Heather C Mefford
Dan Doherty
Joshua M Akey
Raphael Bernier
Evan E Eichler
Jay Shendure
University of Washington · USSeattle Children's Hospital · US

Funding

Comprehensive Sequencing and Analysis of Variation in NHLBI CohortsUC2HL102925 · NHLBI · BROAD INSTITUTE, INC. · PI ALTSHULER, DAVID, GABRIEL, STACEY · 2010 to 2010
$14.7M
Northwest Genomics CenterUC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2010 to 2010
$14.0M
Northwest Genomics CenterRC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2009 to 2009
$11.0M
Comprehensive Sequencing and Analysis of Variation in NHLBI CohortsRC2HL102925 · NHLBI · BROAD INSTITUTE, INC. · PI ALTSHULER, DAVID, GABRIEL, STACEY · 2009 to 2009
$10.2M
A Genomic Approach to EpilepsyR01NS069605 · NINDS · UNIVERSITY OF WASHINGTON · PI MEFFORD, HEATHER C. · 2010 to 2019
$4.9M
Genomic Identification of Autism LociR01HD065285 · NICHD · UNIVERSITY OF WASHINGTON · PI EICHLER, EVAN · 2009 to 2010
$2.6M
ARRA - NHLBI Lung Cohorts Sequencing ProjectRC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2009 to 2009
$2.6M
ARRA - NHLBI Lung Cohorts Sequencing ProjectUC2HL102923 · NHLBI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, BARNES, KATHLEEN C · 2010 to 2010
$2.6M
WHI Sequencing Project (WHISP)UC2HL102924 · NHLBI · OHIO STATE UNIVERSITY · PI CARLSON, CHRISTOPHER S, JACKSON, REBECCA D · 2010 to 2010
$2.4M
WHI Sequencing Project (WHISP)RC2HL102924 · NHLBI · OHIO STATE UNIVERSITY · PI CARLSON, CHRISTOPHER S, JACKSON, REBECCA D · 2009 to 2009
$2.1M
Joubert syndrome and related disorders of hindbrain developmentR01NS064077 · NINDS · UNIVERSITY OF WASHINGTON · PI DOHERTY, DANIEL · 2010 to 2014
$1.8M
Human Exome Sequencing in Six Well-Phenotyped NHLBI CohortsUC2HL103010 · NHLBI · UNIVERSITY OF VIRGINIA · PI RICH, STEPHEN S. · 2010 to 2010
$1.5M
Howard Hughes Medical InstituteNHLBI NIH HHS HL-102923NHLBI NIH HHS HL-102924NHLBI NIH HHS HL-102925NHLBI NIH HHS HL-102926NHLBI NIH HHS HL-103010NHLBI NIH HHS RC2 HL102923NHLBI NIH HHS RC2 HL102924NHLBI NIH HHS RC2 HL102925NHLBI NIH HHS RC2 HL102926NHLBI NIH HHS RC2 HL103010NHLBI NIH HHS UC2 HL102923NHLBI NIH HHS UC2 HL102924NHLBI NIH HHS UC2 HL102925NHLBI NIH HHS UC2 HL102926NHLBI NIH HHS UC2 HL103010NICHD NIH HHS HD065285NICHD NIH HHS R01 HD065285NINDS NIH HHS NS069605NINDS NIH HHS R01 NS064077NINDS NIH HHS R01 NS069605NINDS NIH HHS R56 NS069605
6 · The paper itself

Abstract

Exome sequencing studies of autism spectrum disorders (ASDs) have identified many de novo mutations but few recurrently disrupted genes. We therefore developed a modified molecular inversion probe method enabling ultra-low-cost candidate gene resequencing in very large cohorts. To demonstrate the power of this approach, we captured and sequenced 44 candidate genes in 2446 ASD probands. We discovered 27 de novo events in 16 genes, 59% of which are predicted to truncate proteins or disrupt splicing. We estimate that recurrent disruptive mutations in six genes-CHD8, DYRK1A, GRIN2B, TBR1, PTEN, and TBL1XR1-may contribute to 1% of sporadic ASDs. Our data support associations between specific genes and reciprocal subphenotypes (CHD8-macrocephaly and DYRK1A-microcephaly) and replicate the importance of a β-catenin-chromatin-remodeling network to ASD etiology.

Indexed as

Genetic Association StudiesMutationbeta CateninCephalometryChildChild Development Disorders, PervasiveChild, PreschoolChromatin Assembly and DisassemblyCohort StudiesDNA-Binding ProteinsDNA ProbesDyrk KinasesExomeFemaleGenetic Predisposition to DiseaseHumansbeta CateninCHD8 protein, humanDNA-Binding ProteinsDNA ProbesDyrk KinasesNR2B NMDA receptorNuclear ProteinsProtein Serine-Threonine KinasesProtein-Tyrosine KinasesPTEN PhosphohydrolasePTEN protein, humanReceptors, Cytoplasmic and NuclearReceptors, N-Methyl-D-AspartateRepressor ProteinsTBL1XR1 protein, humanT-Box Domain ProteinsTBR1 protein, humanTranscription Factors

Identifiers

PMID23160955
PMCPMC3528801
OpenAlexW1988670106

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.