Evidence map›Paper›PMID 23160512›Full record

ArticleJournal of the American Society of Nephrology : JASN2013

HNF1β is essential for nephron segmentation during nephrogenesis.

Richard W Naylor, Aneta Przepiorski, Qun Ren, Jing Yu, Alan J Davidson

Abstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Loss ofbioRxiv : the preprint server for biology · 2026
    Article
  2. Review
  3. Article
  4. Article
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  6. Article
  7. Article
  8. Article
  9. Review
  10. Co-Expression of MultipleInternational journal of molecular sciences · 2023
    Article
  11. A single-cell multiomic analysis of kidney organoid differentiation.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Article
  13. Principles of Zebrafish Nephron Segment Development.Journal of developmental biology · 2023
    Review
  14. Article
  15. Review
  16. Harnessing mechanobiology for kidney organoid research.Frontiers in cell and developmental biology · 2023
    Review
  17. Biomedicines · 2022
    Article
  18. Article
  19. Biomedicines · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Richard W NaylorDepartment of Molecular Medicine and Pathology, University of Auckland, Auckland 1142, New Zealand.
Aneta Przepiorski
Qun Ren
Jing Yu
Alan J Davidson

Funding

Single Nephron and MetabolomicsP30DK079307 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KLEYMAN, THOMAS R · 2008 to 2022
$13.4M
Regulation of Renal Progenitor Cells in Regenerating KidneysR01DK069403 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HUKRIEDE, NEIL A · 2006 to 2020
$4.8M
NIDDK NIH HHS DK069403-06NIDDK NIH HHS P30 DK079307NIDDK NIH HHS R01 DK069403
6 · The paper itself

Abstract

Nephrons comprise a blood filter and an epithelial tubule that is subdivided into proximal and distal segments, but what directs this patterning during kidney organogenesis is not well understood. Using zebrafish, we found that the HNF1β paralogues hnf1ba and hnf1bb, which encode homeodomain transcription factors, are essential for normal segmentation of nephrons. Embryos deficient in hnf1ba and hnf1bb did not express proximal and distal segment markers, yet still developed an epithelial tubule. Initiating hnf1ba/b expression required Pax2a and Pax8, but hnf1ba/b-deficient embryos did not exhibit the expected downregulation of pax2a and pax8 at later stages of development, suggesting complex regulatory loops involving these molecules. Embryos deficient in hnf1ba/b also did not express the irx3b transcription factor, which is responsible for differentiation of the first distal tubule segment. Reciprocally, embryos deficient in irx3b exhibited downregulation of hnf1ba/b transcripts in the distal early segment, suggesting a segment-specific regulatory circuit. Deficiency of hnf1ba/b also led to ectopic expansion of podocytes into the proximal tubule domain. Epistasis experiments showed that the formation of podocytes required wt1a, which encodes the Wilms' tumor suppressor-1 transcription factor, and rbpj, which encodes a mediator of canonical Notch signaling, downstream or parallel to hnf1ba/b. Taken together, these results suggest that Hnf1β factors are essential for normal segmentation of nephrons during kidney organogenesis.

Indexed as

AnimalsCadherinsDown-RegulationEmbryo, NonmammalianHepatocyte Nuclear Factor 1-betaHomeodomain ProteinsNephronsPaired Box Transcription FactorsPAX2 Transcription FactorPAX8 Transcription FactorPodocytesReceptors, NotchSignal TransductionTranscription FactorsTretinoinZebrafishCadherinsCDH17 protein, zebrafishHepatocyte Nuclear Factor 1-betahnf1ba protein, zebrafishHomeodomain Proteinsirx3b protein, Danio rerioPaired Box Transcription Factorspax2a protein, zebrafishPAX2 Transcription FactorPax8 protein, zebrafishPAX8 Transcription FactorReceptors, NotchTranscription FactorsTretinoinZebrafish Proteins

Identifiers

PMID23160512
PMCPMC3537220

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.