Evidence map›Paper›PMID 23160128›Full record

ArticleApplied and environmental microbiology2013

Improved production of L-threonine in Escherichia coli by use of a DNA scaffold system.

Jun Hyoung Lee, Suk-Chae Jung, Le Minh Bui, Kui Hyeon Kang, Ji-Joon Song, Sun Chang Kim

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 78 citations in OpenAlex.

  1. Immobilization of Enzyme Cascades with DNA Scaffolds.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
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  6. Dynamic and balanced regulation of theFrontiers in bioengineering and biotechnology · 2023
    Article
  7. Application of artificial scaffold systems in microbial metabolic engineering.Frontiers in bioengineering and biotechnology · 2023
    Review
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  9. Review
  10. Review
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  12. Article
  13. Article
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  15. Article
  16. Escherichia coli as a fatty acid and biodiesel factory: current challenges and future directions.Environmental science and pollution research international · 2016
    Review
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jun Hyoung LeeDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, South Korea.
Suk-Chae Jung
Le Minh Bui
Kui Hyeon Kang
Ji-Joon Song
Sun Chang Kim
Korea Advanced Institute of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite numerous approaches for the development of l-threonine-producing strains, strain development is still hampered by the intrinsic inefficiency of metabolic reactions caused by simple diffusion and random collisions of enzymes and metabolites. A scaffold system, which can promote the proximity of metabolic enzymes and increase the local concentration of intermediates, was reported to be one of the most promising solutions. Here, we report an improvement in l-threonine production in Escherichia coli using a DNA scaffold system, in which a zinc finger protein serves as an adapter for the site-specific binding of each enzyme involved in l-threonine production to a precisely ordered location on a DNA double helix to increase the proximity of enzymes and the local concentration of metabolites to maximize production. The optimized DNA scaffold system for l-threonine production significantly increased the efficiency of the threonine biosynthetic pathway in E. coli, substantially reducing the production time for l-threonine (by over 50%). In addition, this DNA scaffold system enhanced the growth rate of the host strain by reducing the intracellular concentration of toxic intermediates, such as homoserine. Our DNA scaffold system can be used as a platform technology for the construction and optimization of artificial metabolic pathways as well as for the production of many useful biomaterials.

Indexed as

Metabolic EngineeringBiosynthetic PathwaysDNAEscherichia coliMacromolecular SubstancesMultienzyme ComplexesProtein BindingThreonineZinc FingersDNAMacromolecular SubstancesMultienzyme ComplexesThreonine

Identifiers

PMID23160128
PMCPMC3568567
OpenAlexW2118006029

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.