Evidence map›Paper›PMID 23160121›Full record

ArticleApplied and environmental microbiology2013

Mycobacteriophage Ms6 LysA: a peptidoglycan amidase and a useful analytical tool.

Sebabrata Mahapatra, Charles Piechota, Filipa Gil, Yufang Ma, Hairong Huang, Michael S Scherman, Victoria Jones, Martin S Pavelka, Jose Moniz-Pereira, Madalena Pimentel and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Sebabrata MahapatraDepartment of Microbiology Immunology and Pathology, Colorado State University, Fort Collins, CO, USA.
Charles Piechota
Filipa Gil
Yufang Ma
Hairong Huang
Michael S Scherman
Victoria Jones
Martin S Pavelka
Jose Moniz-Pereira
Madalena Pimentel
Michael R McNeil
Dean C Crick
Colorado State University · USUniversity of Lisbon · PTDalian Medical University · CNUniversity of Rochester Medical Center · US

Funding

Sterol/Hopanoid Biosynthesis: An Anti-TB Drug TargetR01AI049151 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI CRICK, DEAN C · 2001 to 2019
$4.1M
CELL WALL BIOGENESIS: TARGET FOR NEW ANTI-TB DRUGSR01AI033706 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI MCNEIL, MICHAEL R · 1992 to 2006
$2.5M
Assembly of the mycobacterial cell wallR01AI073772 · NIAID · UNIVERSITY OF ROCHESTER · PI PAVELKA, MARTIN S. · 2008 to 2012
$1.9M
Menaquinone biosynthesis: a drug target in Gram-positive bacteriaR56AI049151 · NIAID · COLORADO STATE UNIVERSITY · PI CRICK, DEAN C · 2007 to 2007
$320k
NIAID NIH HHS AI049151NIAID NIH HHS AI073772NIAID NIH HHS AI-33706NIAID NIH HHS R01 AI033706NIAID NIH HHS R01 AI049151NIAID NIH HHS R01 AI073772NIAID NIH HHS R56 AI049151
6 · The paper itself

Abstract

Since the peptidoglycan isolated from Mycobacterium spp. is refractory to commercially available murolytic enzymes, possibly due to the presence of various modifications found on this peptidoglycan, the utility of a mycobacteriophage-derived murolytic enzyme was assessed for an analysis of peptidoglycan from mycobacteria. We cloned, expressed, and purified the lysA gene product, a protein with homology to known peptidoglycan-degrading amidases, from bacteriophage Ms6. The recombinant protein was shown to cleave the bond between l-Ala and d-muramic acid of muramyl pentapeptide and to release up to 70% of the diaminopimelic acid present in the isolated mycobacterial cell wall. In contrast to lysozyme, which, in culture, inhibits the growth of both Mycobacterium smegmatis and Mycobacterium tuberculosis, LysA had no effect on the growth of either species. However, the enzyme is useful for solubilizing the peptide chains of isolated mycobacterial peptidoglycan for analysis. The data indicate that the stem peptides from M. smegmatis are heavily amidated, containing few free carboxylic acids, regardless of the cross-linking status.

Indexed as

Cell WallAmidohydrolasesCloning, MolecularDiaminopimelic AcidGene ExpressionMycobacteriophagesMycobacteriumPeptidoglycanamidaseAmidohydrolasesDiaminopimelic AcidPeptidoglycan

Identifiers

PMID23160121
PMCPMC3568546
OpenAlexW2019781579

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.