Evidence map›Paper›PMID 23159879›Full record

ArticleNature biotechnology2012

Large-scale screening using familial dysautonomia induced pluripotent stem cells identifies compounds that rescue IKBKAP expression.

Gabsang Lee, Christina N Ramirez, Hyesoo Kim, Nadja Zeltner, Becky Liu, Constantin Radu, Bhavneet Bhinder, Yong Jun Kim, In Young Choi, Bipasha Mukherjee-Clavin and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature biotechnology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 225 citations in OpenAlex.

  1. Trial
  2. Review
  3. Cell reprogramming: methods, mechanisms and applications.Cell regeneration (London, England) · 2025
    Review
  4. Review
  5. Stem Cell-Based Approaches in Parkinson's Disease Research.International journal of stem cells · 2025
    Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Focus on your locus with a massively parallel reporter assay.Journal of neurodevelopmental disorders · 2022
    Review
  15. Review
  16. Review
  17. Inborn errors of metabolism: Lessons from iPSC models.Reviews in endocrine & metabolic disorders · 2021
    Review
  18. Article
  19. Article
  20. Neural crest-like stem cells for tissue regeneration.Stem cells translational medicine · 2021
    Review

59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Gabsang LeeCenter for Stem Cell Biology, Sloan-Kettering Institute for Cancer Research, New York, New York, USA. glee48@jhmi.edu
Christina N Ramirez
Hyesoo Kim
Nadja Zeltner
Becky Liu
Constantin Radu
Bhavneet Bhinder
Yong Jun Kim
In Young Choi
Bipasha Mukherjee-Clavin
Hakim Djaballah
Lorenz Studer
Kettering University · USJohns Hopkins University · USJohns Hopkins Medicine · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
HTS Screen-Neural Differentiation in Human ES Cells(RMI)R21NS053655 · NINDS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI STUDER, LORENZ P. · 2005 to 2005
$209k
NCI NIH HHS 5 P30 CA008748-44NCI NIH HHS P30 CA008748NINDS NIH HHS R21 NS053655
6 · The paper itself

Abstract

Patient-specific induced pluripotent stem cells (iPSCs) represent a novel system for modeling human genetic disease and could provide a source of cells for large-scale drug-discovery screens. Here we demonstrate the feasibility of performing a primary screen in neural crest precursors derived from iPSCs that were generated from individuals with familial dysautonomia (FD), a rare, fatal genetic disorder affecting neural crest lineages. We tested 6,912 small-molecule compounds and characterized eight that rescued expression of IKBKAP, the gene responsible for FD. One of the hits, SKF-86466, was found to induce IKBKAP transcription through modulation of intracellular cAMP levels and PKA-dependent CREB phosphorylation. SKF-86466 also rescued IKAP protein expression and the disease-specific loss of autonomic neuronal marker expression. Our data implicate alpha-2 adrenergic receptor activity in regulating IKBKAP expression and demonstrate that small-molecule discovery using an iPSC-based disease model can identify candidate drugs for potential therapeutic intervention.

Indexed as

Adrenergic alpha-2 Receptor AntagonistsBiotechnologyCarrier ProteinsCells, CulturedDrug Evaluation, PreclinicalDysautonomia, FamilialGene ExpressionHigh-Throughput Screening AssaysHumansInduced Pluripotent Stem CellsMutant ProteinsNeural CrestPoint MutationTranscriptional Elongation FactorsAdrenergic alpha-2 Receptor AntagonistsCarrier ProteinsElp1 protein, humanMutant ProteinsTranscriptional Elongation Factors

Identifiers

PMID23159879
PMCPMC3711177
OpenAlexW2034879573

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.