Evidence map›Paper›PMID 23159557›Full record

ArticleJournal of molecular biology2013

(77)Se enrichment of proteins expands the biological NMR toolbox.

Stephanie A Schaefer, Ming Dong, Renee P Rubenstein, Wayne A Wilkie, Brian J Bahnson, Colin Thorpe, Sharon Rozovsky

Abstract read
In one paragraph

Article in Journal of molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 38 citations in OpenAlex.

  1. Molecules (Basel, Switzerland) · 2024
    Review
  2. Exploring Sulfur Sites in Proteins via Triple-ResonanceJournal of the American Chemical Society · 2023
    Article
  3. Article
  4. Journal of biomolecular NMR · 2022
    Article
  5. Article
  6. The journal of physical chemistry. B · 2020
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Redox active motifs in selenoproteins.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Stephanie A Schaefer136 Brown Laboratory, Department of Chemistry and Biochemistry, University of Delaware, Newark, DE 19716, USA.
Ming Dong
Renee P Rubenstein
Wayne A Wilkie
Brian J Bahnson
Colin Thorpe
Sharon Rozovsky
University of Delaware · US

Funding

Flavoproteins in Oxidative Protein FoldingR01GM026643 · NIGMS · UNIVERSITY OF DELAWARE · PI THORPE, COLIN · 1985 to 2019
$6.6M
CHEMISTRY-BIOLOGY INTERFACE PREDOCTORAL TRAININGT32GM008550 · NIGMS · UNIVERSITY OF DELAWARE · PI BAHNSON, BRIAN J · 1994 to 2018
$5.0M
COBRE on Membrane Protein Production and CharacterizationP30GM103519 · NIGMS · UNIVERSITY OF DELAWARE · PI LENHOFF, ABRAHAM M · 2012 to 2014
$3.3M
THE ROLE OF MITOCHONDRIAL TRANSPORT PROTEINS IN HEPATOCYTES AND ADIPOCYTESP30RR031160 · NCRR · UNIVERSITY OF DELAWARE · PI ROZOVSKY, SHARON · 2010 to 2011
$2.6M
NCRR NIH HHS 5P30RR031160-03NCRR NIH HHS P30 RR031160NIGMS NIH HHS 1-T32-GM08550NIGMS NIH HHS 8 P30 GM103519-03NIGMS NIH HHS GM26643NIGMS NIH HHS P30 GM103519NIGMS NIH HHS R01 GM026643NIGMS NIH HHS T32 GM008550
6 · The paper itself

Abstract

Sulfur, a key contributor to biological reactivity, is not amendable to investigations by biological NMR spectroscopy. To utilize selenium as a surrogate, we have developed a generally applicable (77)Se isotopic enrichment method for heterologous proteins expressed in Escherichia coli. We demonstrate (77)Se NMR spectroscopy of multiple selenocysteine and selenomethionine residues in the sulfhydryl oxidase augmenter of liver regeneration (ALR). The resonances of the active-site residues were assigned by comparing the NMR spectra of ALR bound to oxidized and reduced flavin adenine dinucleotide. An additional resonance appears only in the presence of the reducing agent and disappears readily upon exposure to air and subsequent reoxidation of the flavin. Hence, (77)Se NMR spectroscopy can be used to report the local electronic environment of reactive and structural sulfur sites, as well as changes taking place in those locations during catalysis.

Indexed as

Magnetic Resonance SpectroscopyCatalysisCrystallography, X-RayCysteineCytochrome ReductasesFlavinsHumansMutationOxidation-ReductionOxidoreductases Acting on Sulfur Group DonorsProtein ConformationProtein FoldingSelenocysteineSelenomethionineSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationCysteineCytochrome ReductasesFlavinsGFER protein, humanOxidoreductases Acting on Sulfur Group DonorsSelenocysteineSelenomethionine

Identifiers

PMID23159557
PMCPMC3540199
OpenAlexW1979874314

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.