Evidence map›Paper›PMID 23155062›Full record

ArticleNucleic acids research2013

Crenarchaeal chromatin proteins Cren7 and Sul7 compact DNA by inducing rigid bends.

Rosalie P C Driessen, He Meng, Gorle Suresh, Rajesh Shahapure, Giovanni Lanzani, U Deva Priyakumar, Malcolm F White, Helmut Schiessel, John van Noort, Remus Th Dame

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Archaea: The Final Frontier of Chromatin.Journal of molecular biology · 2021
    Review
  10. Archaeal transcription.Transcription · 2020
    Review
  11. Article
  12. Review
  13. The Role of Archaeal Chromatin in Transcription.Journal of molecular biology · 2019
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Insights into the interaction between Cren7 and DNA: the role of loop β3-β4.Extremophiles : life under extreme conditions · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 5 countries.

Rosalie P C DriessenMolecular Genetics, Leiden Institute of Chemistry and Cell Observatory, Physics of Life Processes, Leiden Institute of Physics and Cell Observatory, Leiden University, 2333 CC Leiden, The Netherlands.
He Meng
Gorle Suresh
Rajesh Shahapure
Giovanni Lanzani
U Deva Priyakumar
Malcolm F White
Helmut Schiessel
John van Noort
Remus Th Dame
International Institute of Information Technology, Hyderabad · INInstitute of Molecular Genetics · RULorentz Center · NLLife University · USUniversity of St Andrews · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Archaeal chromatin proteins share molecular and functional similarities with both bacterial and eukaryotic chromatin proteins. These proteins play an important role in functionally organizing the genomic DNA into a compact nucleoid. Cren7 and Sul7 are two crenarchaeal nucleoid-associated proteins, which are structurally homologous, but not conserved at the sequence level. Co-crystal structures have shown that these two proteins induce a sharp bend on binding to DNA. In this study, we have investigated the architectural properties of these proteins using atomic force microscopy, molecular dynamics simulations and magnetic tweezers. We demonstrate that Cren7 and Sul7 both compact DNA molecules to a similar extent. Using a theoretical model, we quantify the number of individual proteins bound to the DNA as a function of protein concentration and show that forces up to 3.5 pN do not affect this binding. Moreover, we investigate the flexibility of the bending angle induced by Cren7 and Sul7 and show that the protein-DNA complexes differ in flexibility from analogous bacterial and eukaryotic DNA-bending proteins.

Indexed as

Archaeal ProteinsChromosomal Proteins, Non-HistoneDNADNA-Binding ProteinsMicroscopy, Atomic ForceMolecular Dynamics SimulationNucleic Acid ConformationSulfolobus solfataricusArchaeal ProteinsChromosomal Proteins, Non-HistoneDNADNA-Binding Proteins

Identifiers

PMID23155062
PMCPMC3592393
OpenAlexW2145799724

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.