Evidence map›Paper›PMID 23154967›Full record

ArticleMicrobiology (Reading, England)2013

bZIP transcription factors affecting secondary metabolism, sexual development and stress responses in Aspergillus nidulans.

Wen-Bing Yin, Aaron W Reinke, Melinda Szilágyi, Tamás Emri, Yi-Ming Chiang, Amy E Keating, István Pócsi, Clay C C Wang, Nancy P Keller

Open access · greenAbstract readComparative Study
In one paragraph

Article in Microbiology (Reading, England), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 113 citations in OpenAlex.

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  13. International journal of molecular sciences · 2022
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  15. Role of the blue light receptor geneFrontiers in microbiology · 2022
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  16. Review
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  20. Acid pH Strategy Adaptation throughJournal of fungi (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Wen-Bing YinDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, WI, USA.
Aaron W ReinkeDepartment of Biology, Massachusetts Institute of Technology, MA, USA.
Melinda SzilágyiDepartment of Microbial Biotechnology and Cell Biology, University of Debrecen, Hungary.
Tamás EmriDepartment of Microbial Biotechnology and Cell Biology, University of Debrecen, Hungary.
Yi-Ming ChiangDepartment of Pharmacology and Pharmaceutical Sciences, Department of Chemistry, University of Southern California, CA, USA.
Amy E KeatingDepartment of Biology, Massachusetts Institute of Technology, MA, USA.
István PócsiDepartment of Microbial Biotechnology and Cell Biology, University of Debrecen, Hungary.
Clay C C WangDepartment of Pharmacology and Pharmaceutical Sciences, Department of Chemistry, University of Southern California, CA, USA.
Nancy P KellerDepartment of Bacteriology, University of Wisconsin-Madison, WI, USA.
University of Debrecen · HUMassachusetts Institute of Technology · USUniversity of Southern California · USUniversity of Wisconsin–Madison · US

Funding

Molecular Genetic Mining of the Aspergillus Nidulans Secondary MetabolomeP01GM084077 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI OAKLEY, BERL RAY · 2008 to 2012
$5.4M
Analysis and Design of Coiled Coil PartneringR01GM067681 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI KEATING, AMY E · 2004 to 2012
$2.9M
NIGMS NIH HHS P01 GM084077NIGMS NIH HHS P01GM084077NIGMS NIH HHS R01 GM067681NIGMS NIH HHS R01GM067681
6 · The paper itself

Abstract

The eukaryotic basic leucine zipper (bZIP) transcription factors play critical roles in the organismal response to the environment. Recently, a novel YAP-like bZIP, restorer of secondary metabolism A (RsmA), was found in a suppressor screen of an Aspergillus nidulans secondary metabolism (SM) mutant in which overexpression of rsmA was found to partially remediate loss of SM in Velvet Complex mutants. The Velvet Complex is a conserved fungal transcriptional heteromer that couples SM with sexual development in fungi. Here we characterized and contrasted SM in mutants of RsmA and four other A. nidulans bZIP proteins (NapA, ZipA, ZipB and ZipC) with predicted DNA binding motifs similar to RsmA. Only two overexpression mutants exhibited both SM and sexual abnormalities that were noteworthy: OE : : rsmA resulted in a 100-fold increase in sterigmatocystin and a near loss of meiotic spore production. OE : : napA displayed decreased production of sterigmatocystin, emericellin, asperthecin, shamixanthone and epishamixanthone, coupled with a shift from sexual to asexual development. Quantification of bZIP homodimer and heterodimer formation using fluorescence resonance energy transfer (FRET) suggested that these proteins preferentially self-associate.

Indexed as

Gene Expression Regulation, BacterialMetabolic Networks and PathwaysStress, PhysiologicalAspergillus nidulansBasic-Leucine Zipper Transcription FactorsMutationProtein MultimerizationBasic-Leucine Zipper Transcription Factors

Identifiers

PMID23154967
PMCPMC3542729
OpenAlexW1980299910

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.