Evidence map›Paper›PMID 23153226›Full record

ArticleJournal of biomedical science2012

Expression of KCNQ1OT1, CDKN1C, H19, and PLAGL1 and the methylation patterns at the KvDMR1 and H19/IGF2 imprinting control regions is conserved between human and bovine.

Katherine Marie Robbins, Zhiyuan Chen, Kevin Dale Wells, Rocío Melissa Rivera

Open access · diamondAbstract read
In one paragraph

Article in Journal of biomedical science, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Single-nuclei RNA sequencing (snRNA-seq) uncovers trophoblast cell types and lineages in the mature bovine placenta.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Methylome Dynamics of Bovine Gametes andFrontiers in genetics · 2019
    Article
  12. Article
  13. Review
  14. Article
  15. Epigenetic analysis of bovine parthenogenetic embryonic fibroblasts.The Journal of reproduction and development · 2017
    Article
  16. Review
  17. Article
  18. Characterization of global loss of imprinting in fetal overgrowth syndrome induced by assisted reproduction.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Katherine Marie RobbinsDivision of Animal Sciences, University of Missouri, Columbia, MO, USA.
Zhiyuan Chen
Kevin Dale Wells
Rocío Melissa Rivera
University of Missouri · US

Funding

Establishment of a phenotypical model of adverse outcomes associated with ARTR21HD062920 · NICHD · UNIVERSITY OF MISSOURI-COLUMBIA · PI RIVERA, ROCIO MELISSA, WELLS, KEVIN DALE · 2010 to 2011
$364k
NICHD NIH HHS 5R21HD062920-02
6 · The paper itself

Abstract

backgroundBeckwith-Wiedemann syndrome (BWS) is a loss-of-imprinting pediatric overgrowth syndrome. The primary features of BWS include macrosomia, macroglossia, and abdominal wall defects. Secondary features that are frequently observed in BWS patients are hypoglycemia, nevus flammeus, polyhydramnios, visceromegaly, hemihyperplasia, cardiac malformations, and difficulty breathing. BWS is speculated to occur primarily as the result of the misregulation of imprinted genes associated with two clusters on chromosome 11p15.5, namely the KvDMR1 and H19/IGF2. A similar overgrowth phenotype is observed in bovine and ovine as a result of embryo culture. In ruminants this syndrome is known as large offspring syndrome (LOS). The phenotypes associated with LOS are increased birth weight, visceromegaly, skeletal defects, hypoglycemia, polyhydramnios, and breathing difficulties. Even though phenotypic similarities exist between the two syndromes, whether the two syndromes are epigenetically similar is unknown. In this study we use control Bos taurus indicus X Bos taurus taurus F1 hybrid bovine concepti to characterize baseline imprinted gene expression and DNA methylation status of imprinted domains known to be misregulated in BWS. This work is intended to be the first step in a series of experiments aimed at determining if LOS will serve as an appropriate animal model to study BWS.

resultsThe use of F1 B. t. indicus x B. t. taurus tissues provided us with a tool to unequivocally determine imprinted status of the regions of interest in our study. We found that imprinting is conserved between the bovine and human in imprinted genes known to be associated with BWS. KCNQ1OT1 and PLAGL1 were paternally-expressed while CDKN1C and H19 were maternally-expressed in B. t. indicus x B. t. taurus F1 concepti. We also show that in bovids, differential methylation exists at the KvDMR1 and H19/IGF2 ICRs.

conclusionsBased on these findings we conclude that the imprinted gene expression of KCNQ1OT1, CDKN1C, H19, and PLAGL1 and the methylation patterns at the KvDMR1 and H19/IGF2 ICRs are conserved between human and bovine. Future work will determine if LOS is associated with misregulation at these imprinted loci, similarly to what has been observed for BWS.

Indexed as

Genomic ImprintingAnimalsBeckwith-Wiedemann SyndromeCattleCell Cycle ProteinsChromosomes, Human, Pair 11Conserved SequenceCyclin-Dependent Kinase Inhibitor p57DNA MethylationGene Expression RegulationHumansPotassium Channels, Voltage-GatedRNA, Long NoncodingTranscription FactorsTumor Suppressor ProteinsCDKN1C protein, humanCell Cycle ProteinsCyclin-Dependent Kinase Inhibitor p57H19 long non-coding RNAKCNQ1OT1 long non-coding RNA, humanPLAGL1 protein, humanPotassium Channels, Voltage-GatedRNA, Long NoncodingTranscription FactorsTumor Suppressor Proteins

Identifiers

PMID23153226
PMCPMC3533950
OpenAlexW2149500808

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.