Evidence map›Paper›PMID 23152527›Full record

ArticleJournal of virology2013

Cyclin T1 and CDK9 T-loop phosphorylation are downregulated during establishment of HIV-1 latency in primary resting memory CD4+ T cells.

Sona Budhiraja, Marylinda Famiglietti, Alberto Bosque, Vicente Planelles, Andrew P Rice

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 114 citations in OpenAlex.

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  5. Drug design for cyclin-dependent kinase 9 (CDK9) inhibitorsBiochemistry and biophysics reports · 2025
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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Sona BudhirajaDepartment of Molecular Microbiology and Virology, Baylor College of Medicine, Houston, TX, USA.
Marylinda Famiglietti
Alberto Bosque
Vicente Planelles
Andrew P Rice
University of Utah · USBaylor College of Medicine · US

Funding

Using NK Cells to eliminate the latent HIV reservoirU19AI096113 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI VERDIN, ERIC M. · 2011 to 2015
$39.5M
Virology CoreP30AI036211 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI BUTEL, JANET S · 1994 to 2015
$21.7M
An Ex Vivo Model of HIV-1 Latency and Reactivation using Primary Memory CellsR01AI087508 · NIAID · UNIVERSITY OF UTAH · PI PLANELLES, VICENTE · 2010 to 2014
$1.8M
Identification of novel co-factors for HIV Tat and Rev as therapeutic targetsR21AI102483 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI RICE, ANDREW P · 2012 to 2013
$419k
NIAID NIH HHS 1U19AI096113NIAID NIH HHS AI 036211NIAID NIH HHS AI 087508NIAID NIH HHS AI 102483NIAID NIH HHS P30 AI036211NIAID NIH HHS R01 AI087508NIAID NIH HHS R21 AI102483NIAID NIH HHS U19 AI096113
6 · The paper itself

Abstract

P-TEFb, a cellular kinase composed of Cyclin T1 and CDK9, is essential for processive HIV-1 transcription. P-TEFb activity is dependent on phosphorylation of Thr186 in the CDK9 T loop. In resting CD4(+) T cells which are nonpermissive for HIV-1 replication, the levels of Cyclin T1 and T-loop-phosphorylated CDK9 are very low but increase significantly upon cellular activation. Little is known about how P-TEFb activity and expression are regulated in resting central memory CD4(+) T cells, one of the main reservoirs of latent HIV-1. We used an in vitro primary cell model of HIV-1 latency to show that P-TEFb availability in resting memory CD4(+) T cells is governed by the differential expression and phosphorylation of its subunits. This is in contrast to previous observations in dividing cells, where P-TEFb can be regulated by its sequestration in the 7SK RNP complex. We find that resting CD4(+) T cells, whether naïve or memory and independent of their infection status, have low levels of Cyclin T1 and T-loop-phosphorylated CDK9, which increase upon activation. We also show that the decrease in Cyclin T1 protein upon the acquisition of a memory phenotype is in part due to proteasome-mediated proteolysis and likely also to posttranscriptional downregulation by miR-150. We also found that HEXIM1 levels are very low in ex vivo- and in vitro-generated resting memory CD4(+) T cells, thus limiting the sequestration of P-TEFb in the 7SK RNP complex, indicating that this mechanism is unlikely to be a driver of viral latency in this cell type.

Indexed as

Virus LatencyCD4-Positive T-LymphocytesCells, CulturedCyclin-Dependent Kinase 9Cyclin TGene ExpressionHIV-1HumansPhosphorylationCDK9 protein, humanCyclin-Dependent Kinase 9Cyclin T

Identifiers

PMID23152527
PMCPMC3554045
OpenAlexW2149236270

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.