Evidence map›Paper›PMID 23152518›Full record

ArticleJournal of virology2013

Loss of a tyrosine-dependent trafficking motif in the simian immunodeficiency virus envelope cytoplasmic tail spares mucosal CD4 cells but does not prevent disease progression.

Matthew W Breed, Andrea P O Jordan, Pyone P Aye, Cornelis F Lichtveld, Cecily C Midkiff, Faith R Schiro, Beth S Haggarty, Chie Sugimoto, Xavier Alvarez, Netanya G Sandler and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Matthew W BreedTulane National Primate Research Center, Covington, Louisiana, USA.
Andrea P O Jordan
Pyone P Aye
Cornelis F Lichtveld
Cecily C Midkiff
Faith R Schiro
Beth S Haggarty
Chie Sugimoto
Xavier Alvarez
Netanya G Sandler
Daniel C Douek
Marcelo J Kuroda
Bapi Pahar
Michael Piatak
Jeffrey D Lifson
Brandon F Keele
James A Hoxie
Andrew A Lackner
Tulane University · USFrederick National Laboratory for Cancer Research · USUniversity of Pennsylvania · USNational Institutes of Health · US

Funding

Tulane NPRC SPF Sheltered Outdoor Enclosure ExpansionP51OD011104 · OD · TULANE UNIVERSITY OF LOUISIANA · PI L Lee HAMM · 2012 to 2026
$142.4M
ZETA CHAIN OF T CELL RECEPTOR INTERACTS W/ NEF OF SIV &HIV2P51RR000168 · NCRR · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WESTMORELAND, SUSAN V. · 1985 to 2011
$139.3M
ZCM:A NOVEL BROAD-SPECTRUM MICROBICIDE FOR SEXUALLY TRANSMITTED INFECTIONSP51RR000164 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI VEAZEY, RONALD S. · 1985 to 2011
$100.1M
Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROBERT GROSS · 1999 to 2026
$78.6M
Pathogenic determinants of the SIV envelope transmembrane cytoplasmic domainR01AI074362 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HOXIE, JAMES A · 2008 to 2015
$6.4M
Macrophages in the pathogenesis of AIDSR01AI097059 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI KURODA, MARCELO J · 2012 to 2016
$4.0M
VETERINARY AND COMPARATIVE PATHOLOGYT32RR007000 · NCRR · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WESTMORELAND, SUSAN V. · 1985 to 2011
$2.8M
Research Training in Experimental Medicine and PathologyT32OD011124 · OD · TULANE UNIVERSITY OF LOUISIANA · PI BLAIR, ROBERT, RAPPAPORT, JAY · 2012 to 2019
$2.7M
Research Training in Experimental Medicine and PathologyT32RR021309 · NCRR · TULANE UNIVERSITY OF LOUISIANA · PI LACKNER, ANDREW A · 2005 to 2011
$2.3M
MOUSE MODELS OF CANCER, BONE DISEASE, AND LACTATIONK26RR000168 · NCRR · OHIO STATE UNIVERSITY · PI ROSOL, THOMAS J · 2000 to 2004
$547k
NCRR NIH HHS K26 RR000168NCRR NIH HHS P51 RR000164NCRR NIH HHS P51 RR000168NCRR NIH HHS RR000164NCRR NIH HHS RR000168NCRR NIH HHS T32 RR007000NCRR NIH HHS T32 RR021309NCRR NIH HHS T32-RR021309NIAID NIH HHS AI045008NIAID NIH HHS AI097059NIAID NIH HHS P30 AI045008NIAID NIH HHS R01 AI074362NIAID NIH HHS R01 AI097059NIH HHS P51 OD011104NIH HHS T32 OD011124PHS HHS HHSN266200400088C
6 · The paper itself

Abstract

A hallmark of pathogenic simian immunodeficiency virus (SIV) and human immunodeficiency virus (HIV) infections is the rapid and near-complete depletion of mucosal CD4(+) T lymphocytes from the gastrointestinal tract. Loss of these cells and disruption of epithelial barrier function are associated with microbial translocation, which has been proposed to drive chronic systemic immune activation and disease progression. Here, we evaluate in rhesus macaques a novel attenuated variant of pathogenic SIVmac239, termed ΔGY, which contains a deletion of a Tyr and a proximal Gly from a highly conserved YxxØ trafficking motif in the envelope cytoplasmic tail. Compared to SIVmac239, ΔGY established a comparable acute peak of viremia but only transiently infected lamina propria and caused little or no acute depletion of mucosal CD4(+) T cells and no detectable microbial translocation. Nonetheless, these animals developed T-cell activation and declining peripheral blood CD4(+) T cells and ultimately progressed with clinical or pathological features of AIDS. ΔGY-infected animals also showed no infection of macrophages or central nervous system tissues even in late-stage disease. Although the ΔGY mutation persisted, novel mutations evolved, including the formation of new YxxØ motifs in two of four animals. These findings indicate that disruption of this trafficking motif by the ΔGY mutation leads to a striking alteration in anatomic distribution of virus with sparing of lamina propria and a lack of microbial translocation. Because these animals exhibited wild-type levels of acute viremia and immune activation, our findings indicate that these pathological events are dissociable and that immune activation unrelated to gut damage can be sufficient for the development of AIDS.

Indexed as

AnimalsCD4-Positive T-LymphocytesCentral Nervous SystemDisease ProgressionFemaleGastrointestinal TractIntestinal MucosaMacaca mulattaMacrophagesMaleMolecular Sequence DataMutant ProteinsProtein TransportRNA, ViralSequence Analysis, DNASequence DeletionMutant ProteinsRNA, ViralViral Envelope ProteinsVirulence Factors

Identifiers

PMID23152518
PMCPMC3554169
OpenAlexW2164376261

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.