Evidence map›Paper›PMID 23151582›Full record

ArticleNature2012

Analyses of pig genomes provide insight into porcine demography and evolution.

Martien A M Groenen, Alan L Archibald, Hirohide Uenishi, Christopher K Tuggle, Yasuhiro Takeuchi, Max F Rothschild, Claire Rogel-Gaillard, Chankyu Park, Denis Milan, Hendrik-Jan Megens and 126 more

Open access · hybridAbstract read
In one paragraph

Article in Nature, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 780 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
780citing papers in PubMed, 1 pooled it
75.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

780 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,425 citations in OpenAlex.

  1. Pooled it
  2. Article
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  7. Article
  8. Article
  9. Review
  10. Multi-omics integration of FBMC genomics · 2026
    Article
  11. Animals : an open access journal from MDPI · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Ancient DNA reveals pig domestication history in Northeastern China.Journal, genetic engineering & biotechnology · 2026
    Article
  17. Article
  18. Article
  19. Article
  20. Article

720 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

136 authors at 20 institutions in 12 countries.

Martien A M GroenenAnimal Breeding and Genomics Centre, Wageningen University, De Elst 1, 6708 WD, Wageningen, The Netherlands. martien.groenen@wur.nl
Alan L Archibald
Hirohide Uenishi
Christopher K Tuggle
Yasuhiro Takeuchi
Max F Rothschild
Claire Rogel-Gaillard
Chankyu Park
Denis Milan
Hendrik-Jan Megens
Shengting Li
Denis M Larkin
Heebal Kim
Laurent A F Frantz
Mario Caccamo
Hyeonju Ahn
Bronwen L Aken
Anna Anselmo
Christian Anthon
Loretta Auvil
Bouabid Badaoui
Craig W Beattie
Christian Bendixen
Daniel Berman
Frank Blecha
Jonas Blomberg
Lars Bolund
Mirte Bosse
Sara Botti
Zhan Bujie
Megan Bystrom
Boris Capitanu
Denise Carvalho-Silva
Patrick Chardon
Celine Chen
Ryan Cheng
Sang-Haeng Choi
William Chow
Richard C Clark
Christopher Clee
Richard P M A Crooijmans
Harry D Dawson
Patrice Dehais
Fioravante De Sapio
Bert Dibbits
Nizar Drou
Zhi-Qiang Du
Kellye Eversole
João Fadista
Susan Fairley
Thomas Faraut
Geoffrey J Faulkner
Katie E Fowler
Merete Fredholm
Eric Fritz
James G R Gilbert
Elisabetta Giuffra
Jan Gorodkin
Darren K Griffin
Jennifer L Harrow
Alexander Hayward
Kerstin Howe
Zhi-Liang Hu
Sean J Humphray
Toby Hunt
Henrik Hornshøj
Jin-Tae Jeon
Patric Jern
Matthew Jones
Jerzy Jurka
Hiroyuki Kanamori
Ronan Kapetanovic
Jaebum Kim
Jae-Hwan Kim
Kyu-Won Kim
Tae-Hun Kim
Greger Larson
Kyooyeol Lee
Kyung-Tai Lee
Richard Leggett
Harris A Lewin
Yingrui Li
Wansheng Liu
Jane E Loveland
Yao Lu
Joan K Lunney
Jian Ma
Ole Madsen
Katherine Mann
Lucy Matthews
Stuart McLaren
Takeya Morozumi
Michael P Murtaugh
Jitendra Narayan
Dinh Truong Nguyen
Peixiang Ni
Song-Jung Oh
Suneel Onteru
Frank Panitz
Eung-Woo Park
Hong-Seog Park
Geraldine Pascal
Yogesh Paudel
Miguel Perez-Enciso
Ricardo Ramirez-Gonzalez
James M Reecy
Sandra Rodriguez-Zas
Gary A Rohrer
Lauretta Rund
Yongming Sang
Kyle Schachtschneider
Joshua G Schraiber
John Schwartz
Linda Scobie
Carol Scott
Stephen Searle
Bertrand Servin
Bruce R Southey
Goran Sperber
Peter Stadler
Jonathan V Sweedler
Hakim Tafer
Bo Thomsen
Rashmi Wali
Jian Wang
Jun Wang
Simon White
Xun Xu
Martine Yerle
Guojie Zhang
Jianguo Zhang
Jie Zhang
Shuhong Zhao
Jane Rogers
Carol Churcher
Lawrence B Schook
Wellcome Sanger Institute · GBBGI Group (China) · CNIowa State University · USUniversity of Illinois Urbana-Champaign · USWageningen University & Research · NLAarhus University · DKLaboratoire de Génétique Cellulaire · FRNorwich Research Park · GBKonkuk University · KRRoslin Institute · GBAgricultural Research Service · USAgroParisTech · FRParco Tecnologico Padano · ITUniversity of Copenhagen · DKUppsala University · SEAberystwyth University · GBGlasgow Caledonian University · GBInstitute of Agrobiological Sciences · JPKansas State University · USKorea Research Institute of Bioscience and Biotechnology · KR

Funding

The UIUC Neuroproteomics Center on Cell-Cell SignalingP30DA018310 · NIDA · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI Elena V Romanova · 2004 to 2026
$24.9M
TRANSEPITHELIAL ION TRANSPORT &ITS REGULATIONP20RR017686 · NCRR · KANSAS STATE UNIVERSITY · PI MELGAREJO GARCIA, LUIS TONATIUH · 2002 to 2011
$21.8M
Rephase Update-a Database of Repetitive SequencesP41LM006252 · NLM · GENETIC INFORMATION RESEARCH INSTITUTE · PI JURKA, JERZY WLADYSLAW · 1996 to 2013
$6.0M
Minnesota Training Program in VirologyT32AI083196 · NIAID · UNIVERSITY OF MINNESOTA · PI Louis M Mansky · 2010 to 2026
$3.2M
Integration of resources and studies to elucidate neuropeptide signalingR21DA027548 · NIDA · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI RODRIGUEZ ZAS, SANDRA L · 2009 to 2012
$961k
IMPROVE GENOME ANNOTATION USING MULTIPLE SEQUENCE ALIGNMENT RELIABILITY SCORESR21HG006464 · NHGRI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI MA, JIAN · 2012 to 2013
$383k
Swine in Biomedical Research conferenceR13RR020283 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI SCHOOK, LAWRENCE B · 2004 to 2004
$23k
Swine in Biomedical Research Conference 2011 Creating the Building Blocks: GenomiR13RR032267 · NCRR · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SCHOOK, LAWRENCE B. · 2011 to 2011
$10k
Biotechnology and Biological Sciences Research Council BB/E010520/1Biotechnology and Biological Sciences Research Council BB/E010520/2Biotechnology and Biological Sciences Research Council BB/E010768/1Biotechnology and Biological Sciences Research Council BB/E011640/1Biotechnology and Biological Sciences Research Council BB/G004013/1Biotechnology and Biological Sciences Research Council BB/H005935/1Biotechnology and Biological Sciences Research Council BB/I025328/1Biotechnology and Biological Sciences Research Council BBS/E/D/05191130Biotechnology and Biological Sciences Research Council BBS/E/D/20211550Chief Scientist Office ETM/32European Research Council 249894Medical Research Council G0900950NCRR NIH HHS P20 RR017686NCRR NIH HHS P20-RR017686NCRR NIH HHS R13 RR020283NCRR NIH HHS R13 RR020283ANCRR NIH HHS R13 RR032267NCRR NIH HHS R13 RR032267ANHGRI NIH HHS R21 HG006464NIAID NIH HHS T32 AI083196NIDA NIH HHS P30 DA018310NIDA NIH HHS R21 DA027548NLM NIH HHS 5 P41 LM006252NLM NIH HHS 5 P41LM006252NLM NIH HHS P41 LM006252Wellcome Trust 095908
6 · The paper itself

Abstract

For 10,000 years pigs and humans have shared a close and complex relationship. From domestication to modern breeding practices, humans have shaped the genomes of domestic pigs. Here we present the assembly and analysis of the genome sequence of a female domestic Duroc pig (Sus scrofa) and a comparison with the genomes of wild and domestic pigs from Europe and Asia. Wild pigs emerged in South East Asia and subsequently spread across Eurasia. Our results reveal a deep phylogenetic split between European and Asian wild boars ∼1 million years ago, and a selective sweep analysis indicates selection on genes involved in RNA processing and regulation. Genes associated with immune response and olfaction exhibit fast evolution. Pigs have the largest repertoire of functional olfactory receptor genes, reflecting the importance of smell in this scavenging animal. The pig genome sequence provides an important resource for further improvements of this important livestock species, and our identification of many putative disease-causing variants extends the potential of the pig as a biomedical model.

Indexed as

PhylogenyAnimalsDemographyGenomeModels, AnimalMolecular Sequence DataPopulation DynamicsSus scrofa

Identifiers

PMID23151582
PMCPMC3566564
OpenAlexW2115809399

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.